Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2983

Experiment: Post-colonization (Day 14) - Cage4;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 14) - Cage4;Mouse4
3,760,061	+				-1.5
3,760,062	-				-0.5
3,760,072	+				-2.4
3,760,073	-				-0.7
3,760,084	-				-2.1
3,760,168	+		BT2982	0.19	-0.5
3,760,169	-		BT2982	0.19	-0.6
3,760,176	+		BT2982	0.20	-2.1
3,760,180	-		BT2982	0.20	-0.8
3,760,183	-		BT2982	0.20	-1.2
3,760,183	-		BT2982	0.20	-1.1
3,760,188	+		BT2982	0.21	-1.6
3,760,189	-		BT2982	0.21	-3.4
3,760,209	+		BT2982	0.23	+0.1
3,760,213	-		BT2982	0.24	-0.6
3,760,267	+		BT2982	0.30	-0.7
3,760,267	+		BT2982	0.30	-1.5
3,760,267	+		BT2982	0.30	+0.4
3,760,267	+		BT2982	0.30	-1.5
3,760,296	+		BT2982	0.33	-0.6
3,760,297	-		BT2982	0.33	-3.6
3,760,305	-		BT2982	0.34	-2.0
3,760,335	+		BT2982	0.37	-1.1
3,760,335	+		BT2982	0.37	-1.4
3,760,336	-		BT2982	0.38	-0.2
3,760,336	-		BT2982	0.38	-1.2
3,760,345	+		BT2982	0.39	-2.2
3,760,345	+		BT2982	0.39	-2.0
3,760,365	+		BT2982	0.41	-0.3
3,760,380	+		BT2982	0.43	+0.6
3,760,380	+		BT2982	0.43	-0.1
3,760,391	-		BT2982	0.44	-0.1
3,760,391	-		BT2982	0.44	-1.7
3,760,394	+		BT2982	0.44	-0.4
3,760,401	-		BT2982	0.45	-2.6
3,760,405	-		BT2982	0.45	-1.7
3,760,468	-		BT2982	0.52	-0.4
3,760,477	+		BT2982	0.53	-3.0
3,760,479	+		BT2982	0.54	-0.2
3,760,488	+		BT2982	0.55	+0.0
3,760,488	+		BT2982	0.55	+1.0
3,760,532	-		BT2982	0.60	+1.1
3,760,532	-		BT2982	0.60	-0.2
3,760,534	-		BT2982	0.60	-0.4
3,760,588	+		BT2982	0.66	-0.6
3,760,589	-		BT2982	0.66	-0.7
3,760,632	+		BT2982	0.71	-1.6
3,760,642	-		BT2982	0.72	-0.2
3,760,675	-		BT2982	0.76	-1.8
3,760,689	+		BT2982	0.77	-0.9
3,760,689	+		BT2982	0.77	+1.0
3,760,696	-		BT2982	0.78	+1.4
3,760,746	+		BT2982	0.83	-0.8
3,760,746	+		BT2982	0.83	+0.4
3,760,746	+		BT2982	0.83	+0.1
3,760,755	-		BT2982	0.84	-1.0
3,760,760	+		BT2982	0.85	-0.4
3,760,761	-		BT2982	0.85	+1.2
3,760,761	-		BT2982	0.85	-1.1
3,760,807	+				-1.8
3,760,807	+				+0.8
3,760,851	+				-3.8
3,760,862	+				+0.1
3,760,866	+				+0.4
3,760,883	+				-1.3
3,760,964	+				-0.2
3,760,965	-				+1.8
3,760,965	-				-0.6
3,760,971	-				-1.4
3,760,987	+				-1.2
3,760,989	+				-3.1
3,760,990	-				-1.2
3,760,990	-				+1.0
3,761,004	+				-3.5
3,761,005	-				-1.2
3,761,008	+				-0.2
3,761,008	+				-1.0
3,761,008	+				-1.0
3,761,009	-				-0.6
3,761,009	-				-1.5
3,761,019	-				-0.0
3,761,058	+				-1.8
3,761,074	+				-0.4
3,761,075	-				-0.2
3,761,079	-				-1.1
3,761,079	-				+0.4
3,761,136	-				-1.7
3,761,162	+				-0.2
3,761,166	-				-0.4
3,761,166	-				-2.0
3,761,170	+				+0.8
3,761,170	+				+0.2
3,761,171	-				-2.2
3,761,177	+				-2.6
3,761,177	+				-0.8
3,761,193	+				+0.4
3,761,196	-				-2.2
3,761,238	+		BT2983	0.11	-3.4
3,761,247	-		BT2983	0.12	-1.2
3,761,247	-		BT2983	0.12	-0.2
3,761,261	+		BT2983	0.12	-1.6
3,761,303	-		BT2983	0.15	-0.5
3,761,376	+		BT2983	0.20	-0.6
3,761,377	-		BT2983	0.20	-1.6
3,761,377	-		BT2983	0.20	-0.2
3,761,377	-		BT2983	0.20	-0.3
3,761,395	+		BT2983	0.21	-1.7
3,761,406	-		BT2983	0.21	-2.2
3,761,406	-		BT2983	0.21	-1.6
3,761,502	+		BT2983	0.27	-1.2
3,761,523	-		BT2983	0.29	-1.2
3,761,523	-		BT2983	0.29	-2.0
3,761,635	+		BT2983	0.36	-3.7
3,761,636	-		BT2983	0.36	-0.6
3,761,648	+		BT2983	0.36	-2.1
3,761,661	-		BT2983	0.37	-0.2
3,761,681	+		BT2983	0.38	-0.2
3,761,694	+		BT2983	0.39	-0.6
3,761,694	+		BT2983	0.39	+0.4
3,761,695	-		BT2983	0.39	-1.6
3,761,697	-		BT2983	0.39	-1.0
3,761,697	-		BT2983	0.39	-0.6
3,761,725	-		BT2983	0.41	-0.4
3,761,732	+		BT2983	0.42	+0.4
3,761,732	+		BT2983	0.42	-0.2
3,761,733	-		BT2983	0.42	-1.8
3,761,758	+		BT2983	0.43	-0.1
3,761,776	-		BT2983	0.44	-0.4
3,761,776	-		BT2983	0.44	-2.0
3,761,776	-		BT2983	0.44	-1.8
3,761,817	-		BT2983	0.47	-0.8
3,761,830	+		BT2983	0.48	-1.4
3,761,852	+		BT2983	0.49	-1.2
3,761,870	+		BT2983	0.50	+1.0
3,761,876	+		BT2983	0.51	-3.3
3,761,877	-		BT2983	0.51	-1.2
3,761,896	-		BT2983	0.52	-3.8
3,761,898	-		BT2983	0.52	-0.9
3,761,898	-		BT2983	0.52	-1.0
3,761,900	+		BT2983	0.52	-2.1
3,761,901	+		BT2983	0.52	+1.4
3,761,902	+		BT2983	0.52	-2.2
3,761,903	-		BT2983	0.52	-1.6
3,761,939	+		BT2983	0.55	-0.8
3,761,989	+		BT2983	0.58	-1.4
3,761,989	+		BT2983	0.58	-0.7
3,762,041	+		BT2983	0.61	-1.1
3,762,042	-		BT2983	0.61	-0.2
3,762,047	+		BT2983	0.61	-0.6
3,762,048	-		BT2983	0.61	-1.8
3,762,050	-		BT2983	0.61	-0.7
3,762,061	+		BT2983	0.62	-1.7
3,762,103	+		BT2983	0.65	-1.6
3,762,103	+		BT2983	0.65	-0.6
3,762,111	-		BT2983	0.65	-1.6
3,762,212	+		BT2983	0.71	-1.8
3,762,213	-		BT2983	0.72	+0.8
3,762,215	+		BT2983	0.72	-2.7
3,762,215	+		BT2983	0.72	-0.6
3,762,216	-		BT2983	0.72	+0.4
3,762,219	-		BT2983	0.72	+0.6
3,762,226	+		BT2983	0.72	-1.1
3,762,285	+		BT2983	0.76	-0.6
3,762,286	-		BT2983	0.76	-1.3
3,762,286	-		BT2983	0.76	-0.6
3,762,294	+		BT2983	0.77	-0.2
3,762,318	-		BT2983	0.78	-1.3
3,762,318	-		BT2983	0.78	-2.4
3,762,354	+		BT2983	0.80	-0.2
3,762,354	+		BT2983	0.80	+2.0
3,762,356	+		BT2983	0.80	-2.9
3,762,362	+		BT2983	0.81	-0.2
3,762,362	+		BT2983	0.81	-3.5
3,762,418	+		BT2983	0.84	+0.2
3,762,419	-		BT2983	0.84	+1.2
3,762,421	+		BT2983	0.84	+1.4
3,762,425	+		BT2983	0.85	+0.6
3,762,425	+		BT2983	0.85	-1.0
3,762,434	+		BT2983	0.85	-1.2
3,762,435	-		BT2983	0.85	-0.2
3,762,443	+		BT2983	0.86	-2.8
3,762,473	-		BT2983	0.88	-1.5
3,762,479	-		BT2983	0.88	+0.8
3,762,500	-		BT2983	0.89	-0.9
3,762,560	+				-0.2
3,762,562	+				-4.0
3,762,562	+				-1.6
3,762,562	+				-0.5
3,762,563	-				-0.4
3,762,563	-				-0.2
3,762,563	-				-0.8
3,762,584	-				-1.3
3,762,658	+				-1.0
3,762,675	+				-0.6
3,762,675	+				-1.8
3,762,676	-				+0.0
3,762,683	-				-0.3
3,762,691	+				+0.6
3,762,695	+				-0.6
3,762,703	+				+0.4
3,762,723	+				-1.4
3,762,724	-				-0.0
3,762,724	-				-0.7
3,762,729	-				-2.1
3,762,734	-				-1.2
3,762,734	-				-2.2
3,762,755	-				-1.1
3,762,759	-				-1.8
3,762,802	+				+1.4
3,762,813	-				+0.7
3,762,821	-				-1.0
3,762,864	+				-1.2
3,762,870	+				-0.5
3,762,910	+				-1.2
3,762,910	+				-0.4
3,762,911	-				+0.4
3,763,024	+				+1.0
3,763,033	+				-0.6
3,763,034	-				-0.7
3,763,045	+				-1.4
3,763,056	+				-1.1
3,763,216	-		BT2984	0.18	-1.2
3,763,231	+		BT2984	0.20	+1.3
3,763,234	-		BT2984	0.20	-1.2
3,763,245	+		BT2984	0.21	-0.7
3,763,246	-		BT2984	0.21	-0.8
3,763,255	+		BT2984	0.22	+0.6
3,763,338	+		BT2984	0.31	-1.3
3,763,338	+		BT2984	0.31	-0.2
3,763,339	-		BT2984	0.31	+0.1
3,763,426	-		BT2984	0.39	-1.1
3,763,436	+		BT2984	0.40	-0.6
3,763,437	-		BT2984	0.41	-1.6
3,763,478	+		BT2984	0.45	+0.4
3,763,478	+		BT2984	0.45	+0.4
3,763,478	+		BT2984	0.45	-0.2
3,763,478	+		BT2984	0.45	-2.0
3,763,478	+		BT2984	0.45	-0.2
3,763,478	+		BT2984	0.45	-1.6
3,763,479	-		BT2984	0.45	-0.6
3,763,481	-		BT2984	0.45	-1.4
3,763,489	+		BT2984	0.46	-1.7
3,763,495	-		BT2984	0.46	-1.0
3,763,496	+		BT2984	0.47	-1.0
3,763,497	-		BT2984	0.47	-0.6
3,763,501	+		BT2984	0.47	-3.3
3,763,522	+		BT2984	0.49	-0.2
3,763,571	-		BT2984	0.54	-1.9
3,763,573	+		BT2984	0.54	-2.1
3,763,573	+		BT2984	0.54	-1.4
3,763,605	+		BT2984	0.58	+1.8
3,763,652	+		BT2984	0.62	+0.0
3,763,652	+		BT2984	0.62	-0.4
3,763,653	-		BT2984	0.62	-1.0
3,763,653	-		BT2984	0.62	-0.7
3,763,653	-		BT2984	0.62	-0.4