Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0965

Experiment: Post-colonization (Day 14) - Cage4;Mouse4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0964 and BT0965 are separated by 160 nucleotidesBT0965 and BT0966 are separated by 63 nucleotidesBT0966 and BT0967 are separated by 94 nucleotidesBT0967 and BT0968 are separated by 43 nucleotides BT0964: BT0964 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 1,179,568 to 1,181,970 BT0964 BT0965: BT0965 - putative anti-sigma factor (NCBI ptt file), at 1,182,131 to 1,183,105 BT0965 BT0966: BT0966 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 1,183,169 to 1,183,720 BT0966 BT0967: BT0967 - hypothetical protein (NCBI ptt file), at 1,183,815 to 1,184,036 BT0967 BT0968: BT0968 - conserved hypothetical protein (NCBI ptt file), at 1,184,080 to 1,187,214 BT0968 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1181.140 kb on + strand, within BT0964at 1181.225 kb on - strand, within BT0964at 1181.326 kb on - strand, within BT0964at 1181.415 kb on - strand, within BT0964at 1181.416 kb on + strand, within BT0964at 1181.416 kb on + strand, within BT0964at 1181.453 kb on - strand, within BT0964at 1181.453 kb on - strand, within BT0964at 1181.453 kb on - strand, within BT0964at 1181.466 kb on - strand, within BT0964at 1181.574 kb on - strand, within BT0964at 1181.694 kb on + strand, within BT0964at 1181.698 kb on - strand, within BT0964at 1181.701 kb on - strand, within BT0964at 1181.706 kb on - strand, within BT0964at 1181.713 kb on + strand, within BT0964at 1181.826 kb on - strandat 1181.830 kb on + strandat 1182.184 kb on + strandat 1182.292 kb on - strand, within BT0965at 1182.401 kb on - strand, within BT0965at 1182.520 kb on + strand, within BT0965at 1182.622 kb on - strand, within BT0965at 1182.758 kb on + strand, within BT0965at 1182.765 kb on - strand, within BT0965at 1182.819 kb on - strand, within BT0965at 1182.826 kb on + strand, within BT0965at 1182.881 kb on + strand, within BT0965at 1183.121 kb on + strandat 1183.124 kb on - strandat 1183.198 kb on + strandat 1183.198 kb on + strandat 1183.268 kb on + strand, within BT0966at 1183.268 kb on + strand, within BT0966at 1183.274 kb on + strand, within BT0966at 1183.312 kb on + strand, within BT0966at 1183.313 kb on - strand, within BT0966at 1183.359 kb on - strand, within BT0966at 1183.361 kb on + strand, within BT0966at 1183.364 kb on + strand, within BT0966at 1183.370 kb on + strand, within BT0966at 1183.371 kb on - strand, within BT0966at 1183.371 kb on - strand, within BT0966at 1183.433 kb on + strand, within BT0966at 1183.438 kb on - strand, within BT0966at 1183.452 kb on + strand, within BT0966at 1183.452 kb on + strand, within BT0966at 1183.504 kb on - strand, within BT0966at 1183.603 kb on + strand, within BT0966at 1183.603 kb on + strand, within BT0966at 1183.605 kb on + strand, within BT0966at 1183.636 kb on - strand, within BT0966at 1183.638 kb on + strand, within BT0966at 1183.638 kb on + strand, within BT0966at 1183.646 kb on - strand, within BT0966at 1183.711 kb on + strandat 1183.807 kb on + strandat 1183.817 kb on - strandat 1183.838 kb on - strand, within BT0967at 1183.899 kb on - strand, within BT0967at 1183.959 kb on + strand, within BT0967

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Per-strain Table

Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage4;Mouse4
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1,181,140 + BT0964 0.65 -0.6
1,181,225 - BT0964 0.69 -0.1
1,181,326 - BT0964 0.73 -2.3
1,181,415 - BT0964 0.77 +0.7
1,181,416 + BT0964 0.77 -0.7
1,181,416 + BT0964 0.77 -1.5
1,181,453 - BT0964 0.78 +1.3
1,181,453 - BT0964 0.78 -1.3
1,181,453 - BT0964 0.78 -0.9
1,181,466 - BT0964 0.79 -1.0
1,181,574 - BT0964 0.83 -1.5
1,181,694 + BT0964 0.88 +0.6
1,181,698 - BT0964 0.89 +0.0
1,181,701 - BT0964 0.89 +0.7
1,181,706 - BT0964 0.89 -0.8
1,181,713 + BT0964 0.89 -2.0
1,181,826 - -1.7
1,181,830 + -1.0
1,182,184 + -0.3
1,182,292 - BT0965 0.17 +0.2
1,182,401 - BT0965 0.28 +0.9
1,182,520 + BT0965 0.40 +0.3
1,182,622 - BT0965 0.50 +0.3
1,182,758 + BT0965 0.64 +3.1
1,182,765 - BT0965 0.65 +0.6
1,182,819 - BT0965 0.71 -0.1
1,182,826 + BT0965 0.71 -1.5
1,182,881 + BT0965 0.77 -1.3
1,183,121 + -1.7
1,183,124 - +0.7
1,183,198 + -1.0
1,183,198 + -1.8
1,183,268 + BT0966 0.18 -1.7
1,183,268 + BT0966 0.18 -1.0
1,183,274 + BT0966 0.19 +0.7
1,183,312 + BT0966 0.26 -0.4
1,183,313 - BT0966 0.26 +0.0
1,183,359 - BT0966 0.34 -1.7
1,183,361 + BT0966 0.35 -0.5
1,183,364 + BT0966 0.35 -0.7
1,183,370 + BT0966 0.36 -1.3
1,183,371 - BT0966 0.37 -1.8
1,183,371 - BT0966 0.37 -1.3
1,183,433 + BT0966 0.48 -1.5
1,183,438 - BT0966 0.49 -0.0
1,183,452 + BT0966 0.51 -2.4
1,183,452 + BT0966 0.51 -2.0
1,183,504 - BT0966 0.61 +1.3
1,183,603 + BT0966 0.79 +0.7
1,183,603 + BT0966 0.79 -0.3
1,183,605 + BT0966 0.79 +0.3
1,183,636 - BT0966 0.85 -1.3
1,183,638 + BT0966 0.85 -0.1
1,183,638 + BT0966 0.85 +1.0
1,183,646 - BT0966 0.86 -1.2
1,183,711 + +0.7
1,183,807 + +0.3
1,183,817 - +0.0
1,183,838 - BT0967 0.10 -0.3
1,183,899 - BT0967 0.38 +0.2
1,183,959 + BT0967 0.65 +0.3

Or see this region's nucleotide sequence