Experiment: Post-colonization (Day 14) - Cage4;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0132 and BT0133 overlap by 17 nucleotides BT0133 and BT0134 are separated by 10 nucleotides BT0134 and BT0135 overlap by 23 nucleotides
BT0132: BT0132 - alpha-glucosidase, putative (NCBI ptt file), at 127,918 to 129,852
BT0132
BT0133: BT0133 - putative sugar phosphate isomerase (NCBI ptt file), at 129,836 to 130,669
BT0133
BT0134: BT0134 - conserved hypothetical protein (NCBI ptt file), at 130,680 to 131,063
BT0134
BT0135: BT0135 - conserved hypothetical protein (NCBI ptt file), at 131,041 to 131,823
BT0135
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 128.940 kb on + strand, within BT0132 at 129.071 kb on - strand, within BT0132 at 129.167 kb on + strand, within BT0132 at 129.186 kb on + strand, within BT0132 at 129.194 kb on + strand, within BT0132 at 129.345 kb on + strand, within BT0132 at 129.360 kb on + strand, within BT0132 at 129.389 kb on - strand, within BT0132 at 129.390 kb on + strand, within BT0132 at 129.455 kb on + strand, within BT0132 at 129.456 kb on - strand, within BT0132 at 129.461 kb on - strand, within BT0132 at 129.505 kb on + strand, within BT0132 at 129.505 kb on + strand, within BT0132 at 129.507 kb on + strand, within BT0132 at 129.572 kb on + strand, within BT0132 at 129.585 kb on - strand, within BT0132 at 129.592 kb on + strand, within BT0132 at 129.593 kb on - strand, within BT0132 at 129.648 kb on + strand, within BT0132 at 129.667 kb on - strand at 129.703 kb on + strand at 129.703 kb on + strand at 129.705 kb on + strand at 129.706 kb on - strand at 129.718 kb on + strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.790 kb on - strand at 129.887 kb on - strand at 130.009 kb on + strand, within BT0133 at 130.240 kb on - strand, within BT0133 at 130.276 kb on + strand at 130.277 kb on - strand, within BT0133 at 130.277 kb on - strand, within BT0133 at 130.291 kb on + strand, within BT0133 at 130.327 kb on + strand, within BT0133 at 130.394 kb on + strand, within BT0133 at 130.394 kb on + strand, within BT0133 at 130.395 kb on - strand, within BT0133 at 130.395 kb on - strand, within BT0133 at 130.408 kb on + strand, within BT0133 at 130.482 kb on - strand, within BT0133 at 130.482 kb on - strand, within BT0133 at 130.583 kb on - strand, within BT0133 at 130.681 kb on + strand at 130.689 kb on + strand at 130.716 kb on - strand at 130.822 kb on - strand, within BT0134 at 130.822 kb on - strand, within BT0134 at 130.838 kb on + strand, within BT0134 at 130.932 kb on + strand, within BT0134 at 130.933 kb on - strand, within BT0134 at 130.982 kb on + strand, within BT0134 at 131.044 kb on + strand at 131.045 kb on - strand at 131.077 kb on + strand at 131.083 kb on + strand at 131.124 kb on - strand, within BT0135 at 131.197 kb on + strand, within BT0135 at 131.206 kb on + strand, within BT0135 at 131.242 kb on - strand, within BT0135 at 131.401 kb on - strand, within BT0135 at 131.406 kb on + strand, within BT0135 at 131.419 kb on - strand, within BT0135 at 131.472 kb on + strand, within BT0135 at 131.489 kb on - strand, within BT0135 at 131.569 kb on + strand, within BT0135 at 131.570 kb on - strand, within BT0135 at 131.656 kb on + strand, within BT0135
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage4;Mouse4 remove 128,940 + BT0132 0.53 -0.2 129,071 - BT0132 0.60 -0.0 129,167 + BT0132 0.65 +0.4 129,186 + BT0132 0.66 -0.8 129,194 + BT0132 0.66 +0.4 129,345 + BT0132 0.74 -2.6 129,360 + BT0132 0.75 -1.6 129,389 - BT0132 0.76 +0.4 129,390 + BT0132 0.76 -0.9 129,455 + BT0132 0.79 -1.4 129,456 - BT0132 0.79 +0.1 129,461 - BT0132 0.80 -0.2 129,505 + BT0132 0.82 -1.2 129,505 + BT0132 0.82 +1.6 129,507 + BT0132 0.82 -0.9 129,572 + BT0132 0.85 +0.3 129,585 - BT0132 0.86 +0.2 129,592 + BT0132 0.87 -0.4 129,593 - BT0132 0.87 -0.5 129,648 + BT0132 0.89 -0.6 129,667 - -1.0 129,703 + -1.6 129,703 + -2.6 129,705 + -2.8 129,706 - -0.9 129,718 + -1.2 129,742 - -0.2 129,742 - +0.4 129,790 - -1.3 129,887 - -0.9 130,009 + BT0133 0.21 -0.5 130,240 - BT0133 0.48 -0.1 130,276 + -1.2 130,277 - BT0133 0.53 -1.1 130,277 - BT0133 0.53 -1.8 130,291 + BT0133 0.55 +3.0 130,327 + BT0133 0.59 -1.3 130,394 + BT0133 0.67 -0.6 130,394 + BT0133 0.67 +0.1 130,395 - BT0133 0.67 -0.6 130,395 - BT0133 0.67 +0.4 130,408 + BT0133 0.69 +2.0 130,482 - BT0133 0.77 +2.1 130,482 - BT0133 0.77 -1.2 130,583 - BT0133 0.90 +1.7 130,681 + +0.4 130,689 + -0.4 130,716 - -0.6 130,822 - BT0134 0.37 -1.2 130,822 - BT0134 0.37 -2.6 130,838 + BT0134 0.41 +0.4 130,932 + BT0134 0.66 -1.6 130,933 - BT0134 0.66 -0.9 130,982 + BT0134 0.79 +1.4 131,044 + -0.9 131,045 - -1.3 131,077 + -1.2 131,083 + -1.0 131,124 - BT0135 0.11 -0.9 131,197 + BT0135 0.20 -1.8 131,206 + BT0135 0.21 -2.0 131,242 - BT0135 0.26 +0.4 131,401 - BT0135 0.46 +2.0 131,406 + BT0135 0.47 -0.1 131,419 - BT0135 0.48 -0.6 131,472 + BT0135 0.55 +0.1 131,489 - BT0135 0.57 +0.4 131,569 + BT0135 0.67 -1.1 131,570 - BT0135 0.68 -0.2 131,656 + BT0135 0.79 -1.2
Or see this region's nucleotide sequence