Experiment: Post-colonization (Day 14) - Cage4;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0034 and BT0035 are separated by 442 nucleotides BT0035 and BT0036 are separated by 176 nucleotides BT0036 and BT0037 are separated by 560 nucleotides
BT0034: BT0034 - hypothetical protein (NCBI ptt file), at 30,281 to 31,492
BT0034
BT0035: BT0035 - hypothetical protein (NCBI ptt file), at 31,935 to 32,138
BT0035
BT0036: BT0036 - integrase (NCBI ptt file), at 32,315 to 33,526
BT0036
BT0037: BT0037 - putative transcriptional regulatory protein (NCBI ptt file), at 34,087 to 35,142
BT0037
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 31.432 kb on + strand at 31.552 kb on - strand at 31.728 kb on + strand at 31.759 kb on - strand at 31.759 kb on - strand at 31.896 kb on - strand at 31.914 kb on + strand at 31.947 kb on - strand at 31.970 kb on - strand, within BT0035 at 31.977 kb on - strand, within BT0035 at 32.003 kb on + strand, within BT0035 at 32.092 kb on + strand, within BT0035 at 32.157 kb on + strand at 32.158 kb on - strand at 32.205 kb on + strand at 32.205 kb on + strand at 32.206 kb on - strand at 32.207 kb on + strand at 32.208 kb on - strand at 32.214 kb on + strand at 32.234 kb on - strand at 32.291 kb on - strand at 32.368 kb on + strand at 32.369 kb on - strand at 32.376 kb on - strand at 32.376 kb on - strand at 32.395 kb on - strand at 32.413 kb on + strand at 32.521 kb on + strand, within BT0036 at 32.736 kb on + strand, within BT0036 at 32.850 kb on - strand, within BT0036 at 32.850 kb on - strand, within BT0036 at 32.857 kb on + strand, within BT0036 at 32.874 kb on - strand, within BT0036 at 32.874 kb on - strand, within BT0036 at 32.876 kb on - strand, within BT0036 at 32.899 kb on + strand, within BT0036 at 32.930 kb on + strand, within BT0036 at 32.979 kb on + strand, within BT0036 at 33.027 kb on - strand, within BT0036 at 33.160 kb on + strand, within BT0036 at 33.161 kb on - strand, within BT0036 at 33.161 kb on - strand, within BT0036 at 33.269 kb on + strand, within BT0036 at 33.269 kb on + strand, within BT0036 at 33.271 kb on + strand, within BT0036 at 33.290 kb on - strand, within BT0036 at 33.524 kb on + strand at 33.525 kb on - strand at 33.527 kb on + strand at 33.528 kb on - strand at 33.603 kb on - strand at 33.611 kb on - strand at 33.611 kb on - strand at 33.646 kb on - strand at 33.648 kb on + strand at 33.649 kb on - strand at 33.649 kb on - strand at 33.671 kb on - strand at 33.706 kb on - strand at 33.714 kb on + strand at 33.891 kb on - strand at 33.891 kb on - strand at 33.915 kb on + strand at 33.918 kb on - strand at 34.073 kb on + strand at 34.096 kb on + strand at 34.097 kb on - strand at 34.099 kb on - strand at 34.116 kb on + strand at 34.117 kb on - strand at 34.200 kb on - strand, within BT0037 at 34.278 kb on + strand, within BT0037 at 34.279 kb on - strand, within BT0037 at 34.296 kb on + strand, within BT0037 at 34.305 kb on + strand, within BT0037 at 34.306 kb on - strand, within BT0037 at 34.428 kb on - strand, within BT0037
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage4;Mouse4 remove 31,432 + -0.6 31,552 - -0.2 31,728 + -0.3 31,759 - -0.9 31,759 - -2.4 31,896 - +0.2 31,914 + -1.2 31,947 - -0.2 31,970 - BT0035 0.17 -2.2 31,977 - BT0035 0.21 -1.8 32,003 + BT0035 0.33 +0.2 32,092 + BT0035 0.77 -3.6 32,157 + -0.6 32,158 - -3.3 32,205 + -0.9 32,205 + -0.6 32,206 - -0.9 32,207 + -2.9 32,208 - -0.2 32,214 + -0.6 32,234 - -0.6 32,291 - -1.2 32,368 + -3.5 32,369 - -1.6 32,376 - -0.6 32,376 - -0.0 32,395 - +0.6 32,413 + -2.1 32,521 + BT0036 0.17 -1.2 32,736 + BT0036 0.35 -1.2 32,850 - BT0036 0.44 +0.4 32,850 - BT0036 0.44 -0.3 32,857 + BT0036 0.45 -2.2 32,874 - BT0036 0.46 -1.8 32,874 - BT0036 0.46 +0.4 32,876 - BT0036 0.46 +0.4 32,899 + BT0036 0.48 -0.6 32,930 + BT0036 0.51 +0.4 32,979 + BT0036 0.55 -3.4 33,027 - BT0036 0.59 -1.8 33,160 + BT0036 0.70 -1.9 33,161 - BT0036 0.70 +0.8 33,161 - BT0036 0.70 -1.1 33,269 + BT0036 0.79 -1.8 33,269 + BT0036 0.79 -2.1 33,271 + BT0036 0.79 -3.5 33,290 - BT0036 0.80 -1.2 33,524 + -0.2 33,525 - -1.8 33,527 + -0.9 33,528 - -1.1 33,603 - -0.7 33,611 - -1.3 33,611 - +0.8 33,646 - -0.7 33,648 + -0.6 33,649 - -1.9 33,649 - -0.8 33,671 - -2.2 33,706 - -0.6 33,714 + -0.2 33,891 - +1.1 33,891 - -0.2 33,915 + -1.6 33,918 - -1.1 34,073 + -1.8 34,096 + -0.9 34,097 - +0.5 34,099 - -1.4 34,116 + +1.0 34,117 - -1.4 34,200 - BT0037 0.11 +1.8 34,278 + BT0037 0.18 -0.2 34,279 - BT0037 0.18 +0.4 34,296 + BT0037 0.20 -0.7 34,305 + BT0037 0.21 -0.4 34,306 - BT0037 0.21 -0.4 34,428 - BT0037 0.32 -0.2
Or see this region's nucleotide sequence