Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0563 and SMa0564 are separated by 65 nucleotides SMa0564 and SMa5026 are separated by 83 nucleotides SMa5026 and SMa0567 are separated by 153 nucleotides
SMa0563: SMa0563 - aldehyde or keto oxidase, at 298,329 to 299,318
SMa0563
SMa0564: SMa0564 - dehydrogenase, at 299,384 to 300,487
SMa0564
SMa5026: SMa5026 - hypothetical protein, at 300,571 to 301,050
SMa5026
SMa0567: SMa0567 - hypothetical protein, at 301,204 to 301,761
SMa0567
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.392 kb on + strand at 298.491 kb on + strand, within SMa0563 at 298.491 kb on + strand, within SMa0563 at 298.491 kb on + strand, within SMa0563 at 298.492 kb on - strand, within SMa0563 at 298.492 kb on - strand, within SMa0563 at 298.492 kb on - strand, within SMa0563 at 298.682 kb on + strand, within SMa0563 at 298.861 kb on - strand, within SMa0563 at 299.093 kb on + strand, within SMa0563 at 299.206 kb on + strand, within SMa0563 at 299.206 kb on + strand, within SMa0563 at 299.379 kb on + strand at 299.472 kb on + strand at 299.473 kb on - strand at 299.568 kb on - strand, within SMa0564 at 299.765 kb on + strand at 299.766 kb on - strand, within SMa0564 at 299.772 kb on - strand, within SMa0564 at 299.772 kb on - strand, within SMa0564 at 299.877 kb on + strand, within SMa0564 at 299.878 kb on - strand, within SMa0564 at 299.879 kb on + strand, within SMa0564 at 299.879 kb on + strand, within SMa0564 at 299.880 kb on - strand, within SMa0564 at 299.880 kb on - strand, within SMa0564 at 299.921 kb on + strand, within SMa0564 at 299.921 kb on + strand, within SMa0564 at 299.921 kb on + strand, within SMa0564 at 299.922 kb on - strand, within SMa0564 at 299.922 kb on - strand, within SMa0564 at 300.050 kb on + strand, within SMa0564 at 300.051 kb on - strand, within SMa0564 at 300.211 kb on + strand, within SMa0564 at 300.265 kb on - strand, within SMa0564 at 300.547 kb on - strand at 300.547 kb on - strand at 300.549 kb on + strand at 300.549 kb on + strand at 300.674 kb on + strand, within SMa5026 at 300.761 kb on + strand, within SMa5026 at 300.762 kb on - strand, within SMa5026 at 300.762 kb on - strand, within SMa5026 at 300.906 kb on - strand, within SMa5026 at 300.968 kb on - strand, within SMa5026 at 301.084 kb on - strand at 301.154 kb on + strand at 301.155 kb on - strand at 301.230 kb on + strand at 301.258 kb on + strand at 301.259 kb on - strand at 301.263 kb on - strand, within SMa0567 at 301.280 kb on - strand, within SMa0567 at 301.487 kb on + strand, within SMa0567
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 298,392 + -0.1 298,491 + SMa0563 0.16 -0.3 298,491 + SMa0563 0.16 -0.0 298,491 + SMa0563 0.16 -0.4 298,492 - SMa0563 0.16 +0.2 298,492 - SMa0563 0.16 +0.2 298,492 - SMa0563 0.16 +0.1 298,682 + SMa0563 0.36 +0.5 298,861 - SMa0563 0.54 -0.2 299,093 + SMa0563 0.77 +1.0 299,206 + SMa0563 0.89 -0.4 299,206 + SMa0563 0.89 +0.2 299,379 + +1.0 299,472 + -0.8 299,473 - +0.7 299,568 - SMa0564 0.17 +0.6 299,765 + +0.6 299,766 - SMa0564 0.35 +0.0 299,772 - SMa0564 0.35 -0.4 299,772 - SMa0564 0.35 +0.5 299,877 + SMa0564 0.45 +1.5 299,878 - SMa0564 0.45 -1.1 299,879 + SMa0564 0.45 +0.1 299,879 + SMa0564 0.45 +0.3 299,880 - SMa0564 0.45 +1.7 299,880 - SMa0564 0.45 -0.6 299,921 + SMa0564 0.49 -0.1 299,921 + SMa0564 0.49 +1.2 299,921 + SMa0564 0.49 +1.5 299,922 - SMa0564 0.49 -1.0 299,922 - SMa0564 0.49 +0.1 300,050 + SMa0564 0.60 -1.3 300,051 - SMa0564 0.60 +0.7 300,211 + SMa0564 0.75 -0.1 300,265 - SMa0564 0.80 +0.0 300,547 - +0.2 300,547 - +0.4 300,549 + -0.8 300,549 + +0.2 300,674 + SMa5026 0.21 -0.1 300,761 + SMa5026 0.40 -1.8 300,762 - SMa5026 0.40 -0.4 300,762 - SMa5026 0.40 -0.4 300,906 - SMa5026 0.70 +0.4 300,968 - SMa5026 0.83 -0.3 301,084 - -0.2 301,154 + -2.0 301,155 - -0.8 301,230 + +0.1 301,258 + -0.1 301,259 - -0.3 301,263 - SMa0567 0.11 -0.7 301,280 - SMa0567 0.14 +0.7 301,487 + SMa0567 0.51 +0.6
Or see this region's nucleotide sequence