Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21324 and SM_b21325 overlap by 8 nucleotides SM_b21325 and SM_b21326 are separated by 11 nucleotides SM_b21326 and SM_b21327 overlap by 4 nucleotides SM_b21327 and SM_b21328 are separated by 45 nucleotides
SM_b21324: SM_b21324 - glucose-1-phosphate thymidylyltransferase, at 993,810 to 994,691
_b21324
SM_b21325: SM_b21325 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 994,684 to 995,247
_b21325
SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329
_b21326
SM_b21327: SM_b21327 - dTDP-4-dehydrorhamnose reductase, at 996,326 to 997,228
_b21327
SM_b21328: SM_b21328 - Sir2-like transcriptional silencer protein, at 997,274 to 998,092
_b21328
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 994.422 kb on + strand, within SM_b21324 at 994.423 kb on - strand, within SM_b21324 at 994.423 kb on - strand, within SM_b21324 at 994.467 kb on + strand, within SM_b21324 at 994.482 kb on - strand, within SM_b21324 at 994.579 kb on + strand, within SM_b21324 at 994.580 kb on - strand, within SM_b21324 at 994.644 kb on + strand at 994.645 kb on - strand at 994.653 kb on + strand at 994.774 kb on + strand, within SM_b21325 at 994.775 kb on - strand, within SM_b21325 at 994.837 kb on + strand, within SM_b21325 at 994.873 kb on + strand, within SM_b21325 at 994.874 kb on - strand, within SM_b21325 at 994.874 kb on - strand, within SM_b21325 at 995.080 kb on + strand, within SM_b21325 at 995.088 kb on - strand, within SM_b21325 at 995.098 kb on + strand, within SM_b21325 at 995.150 kb on + strand, within SM_b21325 at 995.150 kb on + strand, within SM_b21325 at 995.151 kb on - strand, within SM_b21325 at 995.364 kb on + strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.412 kb on + strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.546 kb on + strand, within SM_b21326 at 995.716 kb on - strand, within SM_b21326 at 995.744 kb on + strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.788 kb on + strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.827 kb on - strand, within SM_b21326 at 995.881 kb on + strand, within SM_b21326 at 995.882 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.184 kb on + strand, within SM_b21326 at 996.286 kb on - strand at 996.388 kb on + strand at 996.412 kb on + strand at 996.510 kb on - strand, within SM_b21327 at 996.510 kb on - strand, within SM_b21327 at 996.623 kb on - strand, within SM_b21327 at 996.635 kb on + strand, within SM_b21327 at 996.636 kb on - strand, within SM_b21327 at 996.636 kb on - strand, within SM_b21327 at 996.665 kb on + strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.694 kb on + strand, within SM_b21327 at 996.694 kb on + strand, within SM_b21327 at 996.783 kb on - strand, within SM_b21327 at 996.845 kb on - strand, within SM_b21327 at 996.913 kb on + strand, within SM_b21327 at 996.914 kb on - strand, within SM_b21327 at 996.988 kb on - strand, within SM_b21327 at 996.988 kb on - strand, within SM_b21327 at 997.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 994,422 + SM_b21324 0.69 +0.3 994,423 - SM_b21324 0.70 +0.5 994,423 - SM_b21324 0.70 -0.2 994,467 + SM_b21324 0.74 -0.5 994,482 - SM_b21324 0.76 -0.4 994,579 + SM_b21324 0.87 -0.4 994,580 - SM_b21324 0.87 -0.9 994,644 + -0.4 994,645 - -0.0 994,653 + -0.7 994,774 + SM_b21325 0.16 -0.4 994,775 - SM_b21325 0.16 -0.7 994,837 + SM_b21325 0.27 +0.1 994,873 + SM_b21325 0.34 +0.0 994,874 - SM_b21325 0.34 -0.0 994,874 - SM_b21325 0.34 -0.3 995,080 + SM_b21325 0.70 +0.9 995,088 - SM_b21325 0.72 +0.4 995,098 + SM_b21325 0.73 +0.1 995,150 + SM_b21325 0.83 -0.5 995,150 + SM_b21325 0.83 -0.5 995,151 - SM_b21325 0.83 +0.4 995,364 + -0.2 995,365 - -0.2 995,365 - +3.0 995,365 - -0.4 995,412 + SM_b21326 0.14 +1.5 995,413 - SM_b21326 0.14 -0.3 995,413 - SM_b21326 0.14 +0.0 995,413 - SM_b21326 0.14 -0.6 995,546 + SM_b21326 0.27 +0.4 995,716 - SM_b21326 0.43 +1.6 995,744 + SM_b21326 0.45 -0.2 995,779 - SM_b21326 0.49 +0.4 995,779 - SM_b21326 0.49 -0.6 995,787 + SM_b21326 0.49 +0.1 995,787 + SM_b21326 0.49 -0.0 995,787 + SM_b21326 0.49 +0.2 995,787 + SM_b21326 0.49 -1.4 995,787 + SM_b21326 0.49 +0.0 995,788 + SM_b21326 0.49 -0.2 995,788 - SM_b21326 0.49 +0.5 995,788 - SM_b21326 0.49 +0.1 995,788 - SM_b21326 0.49 -0.7 995,788 - SM_b21326 0.49 -0.1 995,788 - SM_b21326 0.49 -0.1 995,788 - SM_b21326 0.49 +0.9 995,827 - SM_b21326 0.53 +0.6 995,881 + SM_b21326 0.58 +1.0 995,882 - SM_b21326 0.58 -0.2 995,905 - SM_b21326 0.60 +0.1 995,905 - SM_b21326 0.60 +1.1 996,001 - SM_b21326 0.69 -0.4 996,001 - SM_b21326 0.69 -0.3 996,001 - SM_b21326 0.69 -0.1 996,184 + SM_b21326 0.86 +0.1 996,286 - -0.1 996,388 + +0.1 996,412 + +1.2 996,510 - SM_b21327 0.20 -0.1 996,510 - SM_b21327 0.20 +0.2 996,623 - SM_b21327 0.33 -0.6 996,635 + SM_b21327 0.34 -0.1 996,636 - SM_b21327 0.34 -0.3 996,636 - SM_b21327 0.34 +0.5 996,665 + SM_b21327 0.38 -0.0 996,666 - SM_b21327 0.38 -0.2 996,666 - SM_b21327 0.38 -2.7 996,666 - SM_b21327 0.38 +0.1 996,666 - SM_b21327 0.38 +0.6 996,694 + SM_b21327 0.41 -0.1 996,694 + SM_b21327 0.41 -0.1 996,783 - SM_b21327 0.51 -0.2 996,845 - SM_b21327 0.57 +0.3 996,913 + SM_b21327 0.65 -1.1 996,914 - SM_b21327 0.65 -0.3 996,988 - SM_b21327 0.73 +1.4 996,988 - SM_b21327 0.73 -0.8 997,227 - +1.1
Or see this region's nucleotide sequence