Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21084

Experiment: Methyl beta-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21082 and SM_b21083 are separated by 135 nucleotidesSM_b21083 and SM_b21084 overlap by 4 nucleotidesSM_b21084 and SM_b21085 are separated by 62 nucleotides SM_b21082: SM_b21082 - mannose-6-phosphate isomerase, GDP-mannose pyrophosphorylase, at 719,985 to 722,288 _b21082 SM_b21083: SM_b21083 - hypothetical protein, at 722,424 to 722,867 _b21083 SM_b21084: SM_b21084 - hypothetical protein, at 722,864 to 723,217 _b21084 SM_b21085: SM_b21085 - hypothetical protein, at 723,280 to 724,932 _b21085 Position (kb) 722 723 724Strain fitness (log2 ratio) -1 0 1 2at 721.866 kb on + strand, within SM_b21082at 721.867 kb on - strand, within SM_b21082at 722.072 kb on + strandat 722.155 kb on + strandat 722.155 kb on + strandat 722.155 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.161 kb on - strandat 722.161 kb on - strandat 722.188 kb on - strandat 722.214 kb on + strandat 722.273 kb on + strandat 722.273 kb on + strandat 722.312 kb on + strandat 722.313 kb on - strandat 722.316 kb on + strandat 722.337 kb on - strandat 722.337 kb on - strandat 722.362 kb on - strandat 722.369 kb on - strandat 723.140 kb on + strand, within SM_b21084at 723.140 kb on + strand, within SM_b21084at 723.219 kb on + strandat 723.220 kb on - strandat 723.220 kb on - strandat 723.221 kb on + strandat 723.476 kb on - strand, within SM_b21085at 724.062 kb on + strand, within SM_b21085at 724.063 kb on - strand, within SM_b21085at 724.063 kb on - strand, within SM_b21085at 724.100 kb on - strand, within SM_b21085at 724.100 kb on - strand, within SM_b21085

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
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721,866 + SM_b21082 0.82 -0.7
721,867 - SM_b21082 0.82 -0.4
722,072 + -0.5
722,155 + -0.2
722,155 + -0.3
722,155 + -0.2
722,160 + +1.2
722,160 + -1.0
722,160 + -0.2
722,160 + -0.3
722,160 + +1.8
722,160 + -0.6
722,160 + -0.1
722,160 + -1.5
722,161 - -0.3
722,161 - +0.1
722,188 - +0.5
722,214 + +2.0
722,273 + +0.0
722,273 + -0.4
722,312 + +0.6
722,313 - -0.4
722,316 + -0.7
722,337 - -1.1
722,337 - -1.3
722,362 - +0.3
722,369 - -0.0
723,140 + SM_b21084 0.78 -1.6
723,140 + SM_b21084 0.78 -1.5
723,219 + +0.4
723,220 - -0.9
723,220 - +0.1
723,221 + -0.4
723,476 - SM_b21085 0.12 -0.0
724,062 + SM_b21085 0.47 -0.1
724,063 - SM_b21085 0.47 +0.4
724,063 - SM_b21085 0.47 -0.0
724,100 - SM_b21085 0.50 -0.5
724,100 - SM_b21085 0.50 +0.9

Or see this region's nucleotide sequence