Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20618

Experiment: Methyl beta-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20616 and SM_b20617 are separated by 196 nucleotidesSM_b20617 and SM_b20618 overlap by 4 nucleotidesSM_b20618 and SM_b20619 are separated by 69 nucleotides SM_b20616: SM_b20616 - thiamine biosynthesis oxidoreductase, at 1,635,781 to 1,636,758 _b20616 SM_b20617: SM_b20617 - thiazole synthase, at 1,636,955 to 1,637,728 _b20617 SM_b20618: SM_b20618 - thiamine-phosphate pyrophosphorylase, at 1,637,725 to 1,638,330 _b20618 SM_b20619: SM_b20619 - regulatory protein, at 1,638,400 to 1,639,389 _b20619 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2at 1636.749 kb on + strandat 1636.919 kb on + strandat 1636.967 kb on + strandat 1636.967 kb on + strandat 1637.743 kb on + strandat 1637.852 kb on + strand, within SM_b20618at 1637.853 kb on - strand, within SM_b20618at 1637.924 kb on + strand, within SM_b20618at 1638.092 kb on - strand, within SM_b20618at 1638.202 kb on - strand, within SM_b20618at 1638.328 kb on + strandat 1638.485 kb on - strandat 1638.485 kb on - strandat 1638.487 kb on + strandat 1638.488 kb on - strandat 1638.488 kb on - strandat 1638.488 kb on - strandat 1638.489 kb on + strandat 1638.489 kb on + strandat 1638.490 kb on - strandat 1638.490 kb on - strandat 1638.490 kb on - strandat 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.584 kb on + strand, within SM_b20619at 1638.699 kb on - strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.797 kb on - strand, within SM_b20619at 1638.804 kb on - strand, within SM_b20619at 1638.877 kb on + strand, within SM_b20619at 1638.878 kb on - strand, within SM_b20619at 1638.883 kb on + strand, within SM_b20619at 1639.051 kb on + strand, within SM_b20619at 1639.051 kb on + strand, within SM_b20619at 1639.052 kb on - strand, within SM_b20619

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
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1,636,749 + -0.0
1,636,919 + +0.7
1,636,967 + -1.2
1,636,967 + +0.5
1,637,743 + -0.4
1,637,852 + SM_b20618 0.21 -0.6
1,637,853 - SM_b20618 0.21 -0.7
1,637,924 + SM_b20618 0.33 -0.9
1,638,092 - SM_b20618 0.61 -0.7
1,638,202 - SM_b20618 0.79 -0.4
1,638,328 + +0.2
1,638,485 - -0.1
1,638,485 - -0.2
1,638,487 + +0.5
1,638,488 - -2.0
1,638,488 - -0.6
1,638,488 - -1.0
1,638,489 + -0.6
1,638,489 + -2.1
1,638,490 - +1.2
1,638,490 - -0.7
1,638,490 - -0.2
1,638,557 - SM_b20619 0.16 +0.2
1,638,557 - SM_b20619 0.16 -0.1
1,638,557 - SM_b20619 0.16 -0.0
1,638,557 - SM_b20619 0.16 +2.2
1,638,557 - SM_b20619 0.16 +1.0
1,638,557 - SM_b20619 0.16 +1.1
1,638,584 + SM_b20619 0.19 -0.0
1,638,699 - SM_b20619 0.30 +0.6
1,638,794 + SM_b20619 0.40 -0.7
1,638,794 + SM_b20619 0.40 -0.2
1,638,794 + SM_b20619 0.40 -1.5
1,638,795 - SM_b20619 0.40 +0.2
1,638,795 - SM_b20619 0.40 -0.4
1,638,795 - SM_b20619 0.40 -0.1
1,638,797 - SM_b20619 0.40 -0.5
1,638,804 - SM_b20619 0.41 -0.1
1,638,877 + SM_b20619 0.48 +0.1
1,638,878 - SM_b20619 0.48 +1.5
1,638,883 + SM_b20619 0.49 +0.1
1,639,051 + SM_b20619 0.66 -0.3
1,639,051 + SM_b20619 0.66 +0.8
1,639,052 - SM_b20619 0.66 -0.2

Or see this region's nucleotide sequence