Experiment: Nickel (II) chloride 0.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0555 and Psest_0556 are separated by 329 nucleotides Psest_0556 and Psest_0557 are separated by 368 nucleotides
Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666
_0555
Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724
_0556
Psest_0557: Psest_0557 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 611,093 to 612,793
_0557
Position (kb) 609
610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 609.092 kb on + strand, within Psest_0555 at 609.092 kb on + strand, within Psest_0555 at 609.092 kb on + strand, within Psest_0555 at 609.093 kb on - strand, within Psest_0555 at 609.158 kb on - strand, within Psest_0555 at 609.182 kb on + strand, within Psest_0555 at 609.183 kb on - strand, within Psest_0555 at 609.284 kb on + strand, within Psest_0555 at 609.284 kb on + strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.285 kb on - strand, within Psest_0555 at 609.395 kb on + strand, within Psest_0555 at 609.396 kb on - strand, within Psest_0555 at 609.396 kb on - strand, within Psest_0555 at 609.396 kb on - strand, within Psest_0555 at 609.492 kb on - strand, within Psest_0555 at 609.562 kb on + strand at 609.562 kb on + strand at 609.563 kb on - strand at 609.619 kb on - strand at 609.620 kb on + strand at 609.620 kb on + strand at 609.620 kb on + strand at 609.620 kb on + strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.621 kb on - strand at 609.786 kb on + strand at 609.787 kb on - strand at 609.787 kb on - strand at 609.787 kb on - strand at 609.820 kb on + strand at 609.936 kb on + strand at 609.997 kb on + strand at 609.998 kb on - strand at 610.052 kb on - strand at 610.429 kb on + strand, within Psest_0556 at 610.430 kb on - strand, within Psest_0556 at 610.573 kb on + strand, within Psest_0556 at 610.573 kb on + strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.606 kb on + strand, within Psest_0556 at 610.869 kb on - strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 611.106 kb on + strand at 611.106 kb on + strand at 611.107 kb on - strand at 611.175 kb on + strand at 611.175 kb on + strand at 611.175 kb on + strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.209 kb on - strand at 611.255 kb on + strand at 611.329 kb on + strand, within Psest_0557 at 611.329 kb on + strand, within Psest_0557 at 611.330 kb on - strand, within Psest_0557 at 611.330 kb on - strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.589 kb on + strand, within Psest_0557 at 611.590 kb on - strand, within Psest_0557 at 611.590 kb on - strand, within Psest_0557 at 611.590 kb on - strand, within Psest_0557
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM remove 609,092 + Psest_0555 0.61 -2.1 609,092 + Psest_0555 0.61 +0.1 609,092 + Psest_0555 0.61 -1.9 609,093 - Psest_0555 0.61 +1.0 609,158 - Psest_0555 0.65 -0.4 609,182 + Psest_0555 0.67 -0.0 609,183 - Psest_0555 0.67 -0.3 609,284 + Psest_0555 0.74 -0.4 609,284 + Psest_0555 0.74 -0.2 609,285 - Psest_0555 0.74 +1.4 609,285 - Psest_0555 0.74 -2.0 609,285 - Psest_0555 0.74 -0.7 609,285 - Psest_0555 0.74 -1.6 609,285 - Psest_0555 0.74 -0.9 609,285 - Psest_0555 0.74 +1.4 609,285 - Psest_0555 0.74 +0.8 609,285 - Psest_0555 0.74 -0.1 609,285 - Psest_0555 0.74 -2.3 609,395 + Psest_0555 0.82 -0.1 609,396 - Psest_0555 0.82 +1.1 609,396 - Psest_0555 0.82 -0.9 609,396 - Psest_0555 0.82 -0.1 609,492 - Psest_0555 0.88 -0.1 609,562 + +0.6 609,562 + +1.5 609,563 - -0.7 609,619 - +1.0 609,620 + -3.0 609,620 + -0.8 609,620 + +2.8 609,620 + -1.3 609,621 - +0.5 609,621 - -0.3 609,621 - +1.4 609,621 - -0.5 609,621 - +0.2 609,621 - -0.5 609,621 - +0.2 609,621 - +0.7 609,621 - +0.3 609,621 - +0.2 609,621 - -0.8 609,621 - +1.0 609,786 + -0.6 609,787 - -0.3 609,787 - -0.2 609,787 - -0.4 609,820 + +2.2 609,936 + -1.2 609,997 + +1.3 609,998 - +0.8 610,052 - -1.4 610,429 + Psest_0556 0.59 -1.6 610,430 - Psest_0556 0.60 -0.7 610,573 + Psest_0556 0.79 +1.7 610,573 + Psest_0556 0.79 -1.8 610,574 - Psest_0556 0.79 -0.6 610,574 - Psest_0556 0.79 -1.8 610,574 - Psest_0556 0.79 +0.3 610,574 - Psest_0556 0.79 +0.1 610,574 - Psest_0556 0.79 -0.6 610,579 + Psest_0556 0.80 -0.3 610,579 + Psest_0556 0.80 -0.0 610,579 + Psest_0556 0.80 -1.5 610,579 + Psest_0556 0.80 +0.1 610,579 + Psest_0556 0.80 -0.8 610,579 + Psest_0556 0.80 -1.6 610,579 + Psest_0556 0.80 -0.9 610,579 + Psest_0556 0.80 -2.5 610,579 + Psest_0556 0.80 -0.7 610,579 + Psest_0556 0.80 +1.2 610,579 + Psest_0556 0.80 +1.1 610,580 - Psest_0556 0.80 -0.0 610,580 - Psest_0556 0.80 -0.8 610,580 - Psest_0556 0.80 -0.5 610,580 - Psest_0556 0.80 -2.0 610,580 - Psest_0556 0.80 -1.6 610,580 - Psest_0556 0.80 -0.3 610,580 - Psest_0556 0.80 -1.9 610,606 + Psest_0556 0.84 -0.1 610,869 - +0.9 610,902 + -0.8 610,902 + +1.7 610,902 + -0.5 610,902 + +1.7 610,902 + +0.6 610,903 - -0.9 610,903 - -0.2 610,903 - -0.1 610,903 - -0.8 610,903 - -0.5 610,906 + -1.8 610,906 + -1.0 610,906 + +0.5 610,906 + -0.5 610,906 + -0.5 610,906 + +2.7 610,906 + -0.0 610,906 + +1.1 610,906 + -0.3 610,907 - -0.4 610,907 - +0.3 610,907 - -0.2 610,907 - +0.0 610,907 - -1.1 610,907 - +0.4 611,106 + +1.4 611,106 + -2.0 611,107 - -0.4 611,175 + +1.1 611,175 + +0.7 611,175 + +0.2 611,176 - -0.7 611,176 - +1.1 611,176 - +0.5 611,176 - -1.2 611,176 - -0.2 611,176 - +1.4 611,209 - +1.0 611,255 + +0.5 611,329 + Psest_0557 0.14 +1.8 611,329 + Psest_0557 0.14 -1.2 611,330 - Psest_0557 0.14 -1.0 611,330 - Psest_0557 0.14 +0.5 611,577 + Psest_0557 0.28 +0.7 611,577 + Psest_0557 0.28 -2.0 611,577 + Psest_0557 0.28 +1.1 611,577 + Psest_0557 0.28 +0.8 611,577 + Psest_0557 0.28 -0.4 611,577 + Psest_0557 0.28 -0.3 611,577 + Psest_0557 0.28 +2.7 611,578 - Psest_0557 0.29 +1.1 611,578 - Psest_0557 0.29 +0.5 611,578 - Psest_0557 0.29 -0.7 611,578 - Psest_0557 0.29 +1.7 611,578 - Psest_0557 0.29 +0.4 611,578 - Psest_0557 0.29 +1.0 611,578 - Psest_0557 0.29 -1.8 611,578 - Psest_0557 0.29 -0.3 611,578 - Psest_0557 0.29 -2.8 611,589 + Psest_0557 0.29 +0.2 611,590 - Psest_0557 0.29 -0.4 611,590 - Psest_0557 0.29 +0.5 611,590 - Psest_0557 0.29 +0.6
Or see this region's nucleotide sequence