Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4045

Experiment: Nickel (II) chloride 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4044 and Psest_4045 are separated by 128 nucleotidesPsest_4045 and Psest_4046 overlap by 4 nucleotides Psest_4044: Psest_4044 - type I site-specific deoxyribonuclease, HsdR family, at 4,214,409 to 4,217,558 _4044 Psest_4045: Psest_4045 - Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen, at 4,217,687 to 4,219,096 _4045 Psest_4046: Psest_4046 - hypothetical protein, at 4,219,093 to 4,220,262 _4046 Position (kb) 4217 4218 4219 4220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4216.826 kb on - strand, within Psest_4044at 4216.931 kb on + strand, within Psest_4044at 4216.931 kb on + strand, within Psest_4044at 4216.932 kb on - strand, within Psest_4044at 4216.932 kb on - strand, within Psest_4044at 4217.032 kb on + strand, within Psest_4044at 4217.032 kb on + strand, within Psest_4044at 4217.032 kb on + strand, within Psest_4044at 4217.032 kb on + strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.033 kb on - strand, within Psest_4044at 4217.205 kb on - strand, within Psest_4044at 4217.227 kb on + strand, within Psest_4044at 4217.228 kb on - strand, within Psest_4044at 4217.706 kb on + strandat 4217.706 kb on + strandat 4217.706 kb on + strandat 4217.706 kb on + strandat 4217.706 kb on + strandat 4217.707 kb on - strandat 4217.707 kb on - strandat 4217.707 kb on - strandat 4217.800 kb on + strandat 4217.865 kb on + strand, within Psest_4045at 4217.865 kb on + strand, within Psest_4045at 4217.865 kb on + strand, within Psest_4045at 4217.866 kb on - strand, within Psest_4045at 4217.866 kb on - strand, within Psest_4045at 4217.866 kb on - strand, within Psest_4045at 4217.866 kb on - strand, within Psest_4045at 4217.866 kb on - strand, within Psest_4045at 4217.972 kb on + strand, within Psest_4045at 4218.034 kb on + strand, within Psest_4045at 4218.313 kb on + strand, within Psest_4045at 4218.324 kb on + strand, within Psest_4045at 4218.324 kb on + strand, within Psest_4045at 4218.324 kb on + strand, within Psest_4045at 4218.325 kb on - strand, within Psest_4045at 4218.325 kb on - strand, within Psest_4045at 4218.325 kb on - strand, within Psest_4045at 4218.325 kb on - strand, within Psest_4045at 4218.325 kb on - strand, within Psest_4045at 4218.409 kb on - strand, within Psest_4045at 4218.522 kb on - strand, within Psest_4045at 4218.790 kb on + strand, within Psest_4045at 4218.938 kb on - strand, within Psest_4045at 4219.102 kb on + strandat 4219.102 kb on + strandat 4219.102 kb on + strandat 4219.102 kb on + strandat 4219.102 kb on + strandat 4219.102 kb on + strandat 4219.103 kb on - strandat 4219.103 kb on - strandat 4219.103 kb on - strandat 4219.103 kb on - strandat 4219.103 kb on - strandat 4219.103 kb on - strandat 4219.170 kb on + strandat 4219.196 kb on + strandat 4219.216 kb on + strand, within Psest_4046at 4219.222 kb on + strand, within Psest_4046at 4219.223 kb on - strand, within Psest_4046at 4219.223 kb on - strand, within Psest_4046at 4219.260 kb on + strand, within Psest_4046at 4219.260 kb on + strand, within Psest_4046at 4219.261 kb on - strand, within Psest_4046at 4219.326 kb on + strand, within Psest_4046at 4219.326 kb on + strand, within Psest_4046at 4219.326 kb on + strand, within Psest_4046at 4219.326 kb on + strand, within Psest_4046at 4219.326 kb on + strand, within Psest_4046at 4219.327 kb on - strand, within Psest_4046at 4219.366 kb on + strand, within Psest_4046at 4219.366 kb on + strand, within Psest_4046at 4219.366 kb on + strand, within Psest_4046at 4219.372 kb on + strand, within Psest_4046at 4219.373 kb on - strand, within Psest_4046at 4219.373 kb on - strand, within Psest_4046at 4219.373 kb on - strand, within Psest_4046at 4219.390 kb on - strand, within Psest_4046at 4219.458 kb on - strand, within Psest_4046at 4219.566 kb on + strand, within Psest_4046at 4219.566 kb on + strand, within Psest_4046at 4219.566 kb on + strand, within Psest_4046at 4219.566 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.590 kb on + strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.591 kb on - strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.592 kb on + strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.593 kb on - strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.771 kb on + strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.772 kb on - strand, within Psest_4046at 4219.774 kb on + strand, within Psest_4046at 4219.774 kb on + strand, within Psest_4046at 4219.774 kb on + strand, within Psest_4046at 4219.775 kb on - strand, within Psest_4046at 4219.775 kb on - strand, within Psest_4046at 4219.775 kb on - strand, within Psest_4046at 4219.775 kb on - strand, within Psest_4046at 4219.789 kb on + strandat 4219.789 kb on + strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.790 kb on - strand, within Psest_4046at 4219.794 kb on - strand, within Psest_4046at 4219.899 kb on + strand, within Psest_4046at 4219.899 kb on + strand, within Psest_4046at 4219.900 kb on - strand, within Psest_4046at 4219.900 kb on - strand, within Psest_4046at 4219.900 kb on - strand, within Psest_4046at 4219.900 kb on - strand, within Psest_4046at 4219.900 kb on - strand, within Psest_4046at 4219.951 kb on + strand, within Psest_4046at 4219.951 kb on + strand, within Psest_4046at 4219.952 kb on - strand, within Psest_4046at 4219.952 kb on - strand, within Psest_4046at 4219.952 kb on - strand, within Psest_4046at 4219.992 kb on + strand, within Psest_4046at 4220.082 kb on - strand, within Psest_4046at 4220.095 kb on + strand, within Psest_4046at 4220.095 kb on + strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046at 4220.096 kb on - strand, within Psest_4046

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM
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4,216,826 - Psest_4044 0.77 +0.7
4,216,931 + Psest_4044 0.80 +0.3
4,216,931 + Psest_4044 0.80 +1.7
4,216,932 - Psest_4044 0.80 -0.9
4,216,932 - Psest_4044 0.80 -0.0
4,217,032 + Psest_4044 0.83 -0.5
4,217,032 + Psest_4044 0.83 +2.3
4,217,032 + Psest_4044 0.83 +1.3
4,217,032 + Psest_4044 0.83 +0.7
4,217,033 - Psest_4044 0.83 +0.3
4,217,033 - Psest_4044 0.83 +0.7
4,217,033 - Psest_4044 0.83 +1.3
4,217,033 - Psest_4044 0.83 +2.3
4,217,033 - Psest_4044 0.83 -0.5
4,217,033 - Psest_4044 0.83 +0.3
4,217,033 - Psest_4044 0.83 +1.0
4,217,205 - Psest_4044 0.89 -0.5
4,217,227 + Psest_4044 0.89 -0.5
4,217,228 - Psest_4044 0.89 +2.3
4,217,706 + +0.7
4,217,706 + +0.4
4,217,706 + -0.3
4,217,706 + -0.4
4,217,706 + +0.8
4,217,707 - -0.5
4,217,707 - +0.3
4,217,707 - +0.1
4,217,800 + -0.9
4,217,865 + Psest_4045 0.13 -2.2
4,217,865 + Psest_4045 0.13 -1.2
4,217,865 + Psest_4045 0.13 -1.9
4,217,866 - Psest_4045 0.13 -1.5
4,217,866 - Psest_4045 0.13 -0.7
4,217,866 - Psest_4045 0.13 -1.8
4,217,866 - Psest_4045 0.13 -1.1
4,217,866 - Psest_4045 0.13 +0.5
4,217,972 + Psest_4045 0.20 -0.7
4,218,034 + Psest_4045 0.25 -0.3
4,218,313 + Psest_4045 0.44 -0.5
4,218,324 + Psest_4045 0.45 -0.7
4,218,324 + Psest_4045 0.45 +0.3
4,218,324 + Psest_4045 0.45 +1.1
4,218,325 - Psest_4045 0.45 -0.7
4,218,325 - Psest_4045 0.45 -2.5
4,218,325 - Psest_4045 0.45 +0.5
4,218,325 - Psest_4045 0.45 +2.1
4,218,325 - Psest_4045 0.45 +0.3
4,218,409 - Psest_4045 0.51 -1.0
4,218,522 - Psest_4045 0.59 -0.5
4,218,790 + Psest_4045 0.78 -0.9
4,218,938 - Psest_4045 0.89 -0.3
4,219,102 + +0.4
4,219,102 + -0.8
4,219,102 + +0.5
4,219,102 + -2.8
4,219,102 + -0.4
4,219,102 + +0.0
4,219,103 - -0.3
4,219,103 - -1.3
4,219,103 - -0.2
4,219,103 - -0.9
4,219,103 - +0.3
4,219,103 - +0.2
4,219,170 + +1.7
4,219,196 + -0.3
4,219,216 + Psest_4046 0.11 -1.1
4,219,222 + Psest_4046 0.11 +2.7
4,219,223 - Psest_4046 0.11 +1.7
4,219,223 - Psest_4046 0.11 +0.3
4,219,260 + Psest_4046 0.14 -1.8
4,219,260 + Psest_4046 0.14 +0.4
4,219,261 - Psest_4046 0.14 -2.7
4,219,326 + Psest_4046 0.20 +0.3
4,219,326 + Psest_4046 0.20 +0.2
4,219,326 + Psest_4046 0.20 -2.0
4,219,326 + Psest_4046 0.20 -1.5
4,219,326 + Psest_4046 0.20 -0.4
4,219,327 - Psest_4046 0.20 -1.7
4,219,366 + Psest_4046 0.23 +0.4
4,219,366 + Psest_4046 0.23 +0.2
4,219,366 + Psest_4046 0.23 -0.5
4,219,372 + Psest_4046 0.24 -0.1
4,219,373 - Psest_4046 0.24 -0.8
4,219,373 - Psest_4046 0.24 +0.8
4,219,373 - Psest_4046 0.24 +0.5
4,219,390 - Psest_4046 0.25 -2.1
4,219,458 - Psest_4046 0.31 -2.4
4,219,566 + Psest_4046 0.40 +0.4
4,219,566 + Psest_4046 0.40 +0.7
4,219,566 + Psest_4046 0.40 +1.3
4,219,566 + Psest_4046 0.40 +0.6
4,219,590 + Psest_4046 0.42 +1.8
4,219,590 + Psest_4046 0.42 -1.2
4,219,590 + Psest_4046 0.42 +1.4
4,219,590 + Psest_4046 0.42 -0.0
4,219,590 + Psest_4046 0.42 -0.3
4,219,590 + Psest_4046 0.42 -0.8
4,219,590 + Psest_4046 0.42 -1.1
4,219,590 + Psest_4046 0.42 -1.0
4,219,590 + Psest_4046 0.42 -0.0
4,219,590 + Psest_4046 0.42 +1.1
4,219,591 - Psest_4046 0.43 -1.7
4,219,591 - Psest_4046 0.43 -1.7
4,219,591 - Psest_4046 0.43 -0.0
4,219,591 - Psest_4046 0.43 -1.9
4,219,591 - Psest_4046 0.43 +1.7
4,219,591 - Psest_4046 0.43 +0.7
4,219,591 - Psest_4046 0.43 +0.0
4,219,591 - Psest_4046 0.43 -2.0
4,219,591 - Psest_4046 0.43 -0.6
4,219,591 - Psest_4046 0.43 +0.1
4,219,591 - Psest_4046 0.43 -0.6
4,219,592 + Psest_4046 0.43 +0.4
4,219,592 + Psest_4046 0.43 -0.3
4,219,592 + Psest_4046 0.43 -1.3
4,219,592 + Psest_4046 0.43 -1.3
4,219,592 + Psest_4046 0.43 -0.6
4,219,592 + Psest_4046 0.43 +0.3
4,219,592 + Psest_4046 0.43 +1.5
4,219,592 + Psest_4046 0.43 -2.2
4,219,592 + Psest_4046 0.43 -1.1
4,219,593 - Psest_4046 0.43 -0.9
4,219,593 - Psest_4046 0.43 -0.3
4,219,593 - Psest_4046 0.43 -0.2
4,219,593 - Psest_4046 0.43 +0.7
4,219,593 - Psest_4046 0.43 +0.8
4,219,593 - Psest_4046 0.43 -1.7
4,219,593 - Psest_4046 0.43 +0.3
4,219,771 + Psest_4046 0.58 +1.3
4,219,771 + Psest_4046 0.58 -2.1
4,219,771 + Psest_4046 0.58 +2.1
4,219,771 + Psest_4046 0.58 -1.4
4,219,771 + Psest_4046 0.58 -0.0
4,219,771 + Psest_4046 0.58 -0.2
4,219,771 + Psest_4046 0.58 -0.5
4,219,771 + Psest_4046 0.58 -1.2
4,219,771 + Psest_4046 0.58 +0.9
4,219,771 + Psest_4046 0.58 +0.7
4,219,771 + Psest_4046 0.58 -0.1
4,219,771 + Psest_4046 0.58 -1.8
4,219,771 + Psest_4046 0.58 -1.4
4,219,771 + Psest_4046 0.58 +1.2
4,219,771 + Psest_4046 0.58 -1.8
4,219,771 + Psest_4046 0.58 -0.5
4,219,771 + Psest_4046 0.58 +1.0
4,219,772 - Psest_4046 0.58 +0.7
4,219,772 - Psest_4046 0.58 -0.7
4,219,772 - Psest_4046 0.58 -1.7
4,219,772 - Psest_4046 0.58 +1.5
4,219,772 - Psest_4046 0.58 +0.5
4,219,772 - Psest_4046 0.58 +0.5
4,219,772 - Psest_4046 0.58 -0.4
4,219,772 - Psest_4046 0.58 -0.6
4,219,772 - Psest_4046 0.58 +1.0
4,219,772 - Psest_4046 0.58 +0.9
4,219,772 - Psest_4046 0.58 +0.9
4,219,774 + Psest_4046 0.58 +0.8
4,219,774 + Psest_4046 0.58 -1.6
4,219,774 + Psest_4046 0.58 -0.7
4,219,775 - Psest_4046 0.58 -1.7
4,219,775 - Psest_4046 0.58 -1.2
4,219,775 - Psest_4046 0.58 -0.4
4,219,775 - Psest_4046 0.58 -1.3
4,219,789 + -0.7
4,219,789 + Psest_4046 0.59 +0.4
4,219,790 - Psest_4046 0.60 +0.9
4,219,790 - Psest_4046 0.60 -1.4
4,219,790 - Psest_4046 0.60 -2.0
4,219,790 - Psest_4046 0.60 -0.3
4,219,790 - Psest_4046 0.60 -1.1
4,219,790 - Psest_4046 0.60 +2.1
4,219,790 - Psest_4046 0.60 -1.0
4,219,790 - Psest_4046 0.60 -0.9
4,219,790 - Psest_4046 0.60 -0.9
4,219,790 - Psest_4046 0.60 +0.5
4,219,790 - Psest_4046 0.60 -0.8
4,219,794 - Psest_4046 0.60 +1.0
4,219,899 + Psest_4046 0.69 +1.1
4,219,899 + Psest_4046 0.69 -2.2
4,219,900 - Psest_4046 0.69 +1.1
4,219,900 - Psest_4046 0.69 -0.5
4,219,900 - Psest_4046 0.69 -0.1
4,219,900 - Psest_4046 0.69 -0.9
4,219,900 - Psest_4046 0.69 +0.2
4,219,951 + Psest_4046 0.73 -1.2
4,219,951 + Psest_4046 0.73 -1.0
4,219,952 - Psest_4046 0.73 -0.8
4,219,952 - Psest_4046 0.73 -1.0
4,219,952 - Psest_4046 0.73 -1.9
4,219,992 + Psest_4046 0.77 -1.4
4,220,082 - Psest_4046 0.85 +0.4
4,220,095 + Psest_4046 0.86 +0.0
4,220,095 + Psest_4046 0.86 -1.7
4,220,096 - Psest_4046 0.86 +0.0
4,220,096 - Psest_4046 0.86 +0.0
4,220,096 - Psest_4046 0.86 +1.1
4,220,096 - Psest_4046 0.86 -0.7
4,220,096 - Psest_4046 0.86 -1.2
4,220,096 - Psest_4046 0.86 +0.2
4,220,096 - Psest_4046 0.86 +0.9

Or see this region's nucleotide sequence