Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3124

Experiment: Nickel (II) chloride 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3123 and Psest_3124 overlap by 4 nucleotidesPsest_3124 and Psest_3125 are separated by 109 nucleotides Psest_3123: Psest_3123 - dihydroorotase, homodimeric type, at 3,299,633 to 3,300,676 _3123 Psest_3124: Psest_3124 - ribonuclease T, at 3,300,673 to 3,301,347 _3124 Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866 _3125 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -1 0 1 2 3at 3299.861 kb on + strand, within Psest_3123at 3299.861 kb on + strand, within Psest_3123at 3300.108 kb on + strand, within Psest_3123at 3300.108 kb on + strand, within Psest_3123at 3300.431 kb on + strand, within Psest_3123at 3300.433 kb on + strand, within Psest_3123at 3300.434 kb on - strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.459 kb on - strand, within Psest_3123at 3300.550 kb on + strand, within Psest_3123at 3301.016 kb on + strand, within Psest_3124at 3301.016 kb on + strand, within Psest_3124

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM
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3,299,861 + Psest_3123 0.22 +0.2
3,299,861 + Psest_3123 0.22 -0.7
3,300,108 + Psest_3123 0.45 +2.2
3,300,108 + Psest_3123 0.45 +1.2
3,300,431 + Psest_3123 0.76 +0.2
3,300,433 + Psest_3123 0.77 +2.8
3,300,434 - Psest_3123 0.77 +2.2
3,300,458 + Psest_3123 0.79 +2.2
3,300,458 + Psest_3123 0.79 +0.6
3,300,458 + Psest_3123 0.79 +0.2
3,300,459 - Psest_3123 0.79 +1.2
3,300,550 + Psest_3123 0.88 -0.1
3,301,016 + Psest_3124 0.51 +0.2
3,301,016 + Psest_3124 0.51 +0.2

Or see this region's nucleotide sequence