Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2896

Experiment: Nickel (II) chloride 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2895 and Psest_2896 overlap by 8 nucleotidesPsest_2896 and Psest_2897 are separated by 70 nucleotidesPsest_2897 and Psest_2898 are separated by 146 nucleotidesPsest_2898 and Psest_2899 overlap by 8 nucleotides Psest_2895: Psest_2895 - Uncharacterized conserved protein, at 3,091,385 to 3,092,956 _2895 Psest_2896: Psest_2896 - hypothetical protein, at 3,092,949 to 3,093,962 _2896 Psest_2897: Psest_2897 - hypothetical protein, at 3,094,033 to 3,094,308 _2897 Psest_2898: Psest_2898 - hypothetical protein, at 3,094,455 to 3,094,736 _2898 Psest_2899: Psest_2899 - hypothetical protein, at 3,094,729 to 3,094,983 _2899 Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3092.096 kb on - strand, within Psest_2895at 3092.471 kb on - strand, within Psest_2895at 3092.621 kb on - strand, within Psest_2895at 3092.621 kb on - strand, within Psest_2895at 3092.661 kb on - strand, within Psest_2895at 3092.661 kb on - strand, within Psest_2895at 3092.661 kb on - strand, within Psest_2895at 3092.690 kb on + strand, within Psest_2895at 3092.691 kb on - strand, within Psest_2895at 3092.691 kb on - strand, within Psest_2895at 3092.691 kb on - strand, within Psest_2895at 3092.695 kb on - strand, within Psest_2895at 3092.713 kb on + strand, within Psest_2895at 3092.713 kb on + strand, within Psest_2895at 3092.713 kb on + strand, within Psest_2895at 3092.713 kb on + strand, within Psest_2895at 3092.714 kb on - strand, within Psest_2895at 3092.714 kb on - strand, within Psest_2895at 3092.809 kb on + strandat 3092.810 kb on - strandat 3092.811 kb on + strandat 3092.812 kb on - strandat 3092.815 kb on + strandat 3092.816 kb on - strandat 3092.919 kb on - strandat 3093.052 kb on - strand, within Psest_2896at 3093.117 kb on - strand, within Psest_2896at 3093.169 kb on - strand, within Psest_2896at 3093.182 kb on - strand, within Psest_2896at 3093.205 kb on - strand, within Psest_2896at 3093.298 kb on + strand, within Psest_2896at 3093.299 kb on - strand, within Psest_2896at 3093.336 kb on - strand, within Psest_2896at 3093.342 kb on + strand, within Psest_2896at 3093.816 kb on - strand, within Psest_2896at 3093.833 kb on + strand, within Psest_2896at 3094.215 kb on - strand, within Psest_2897at 3094.426 kb on + strandat 3094.426 kb on + strandat 3094.461 kb on - strandat 3094.461 kb on - strandat 3094.525 kb on - strand, within Psest_2898at 3094.525 kb on - strand, within Psest_2898at 3094.525 kb on - strand, within Psest_2898at 3094.566 kb on + strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.591 kb on + strand, within Psest_2898at 3094.722 kb on + strandat 3094.723 kb on - strandat 3094.808 kb on + strand, within Psest_2899at 3094.809 kb on - strand, within Psest_2899

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM
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3,092,096 - Psest_2895 0.45 +1.2
3,092,471 - Psest_2895 0.69 +0.8
3,092,621 - Psest_2895 0.79 -1.2
3,092,621 - Psest_2895 0.79 -1.8
3,092,661 - Psest_2895 0.81 +0.9
3,092,661 - Psest_2895 0.81 +0.8
3,092,661 - Psest_2895 0.81 -1.5
3,092,690 + Psest_2895 0.83 -1.3
3,092,691 - Psest_2895 0.83 +0.4
3,092,691 - Psest_2895 0.83 -1.6
3,092,691 - Psest_2895 0.83 -0.3
3,092,695 - Psest_2895 0.83 +0.0
3,092,713 + Psest_2895 0.84 +0.7
3,092,713 + Psest_2895 0.84 +0.3
3,092,713 + Psest_2895 0.84 -0.5
3,092,713 + Psest_2895 0.84 -1.0
3,092,714 - Psest_2895 0.85 -0.5
3,092,714 - Psest_2895 0.85 +0.1
3,092,809 + -1.4
3,092,810 - +1.3
3,092,811 + +1.6
3,092,812 - +0.1
3,092,815 + -1.8
3,092,816 - -1.0
3,092,919 - -0.1
3,093,052 - Psest_2896 0.10 -1.3
3,093,117 - Psest_2896 0.17 -0.2
3,093,169 - Psest_2896 0.22 -1.6
3,093,182 - Psest_2896 0.23 -2.7
3,093,205 - Psest_2896 0.25 -1.4
3,093,298 + Psest_2896 0.34 -2.9
3,093,299 - Psest_2896 0.35 -2.7
3,093,336 - Psest_2896 0.38 +0.7
3,093,342 + Psest_2896 0.39 -0.1
3,093,816 - Psest_2896 0.86 -1.2
3,093,833 + Psest_2896 0.87 +2.2
3,094,215 - Psest_2897 0.66 -1.0
3,094,426 + +0.2
3,094,426 + +1.9
3,094,461 - -0.7
3,094,461 - -0.7
3,094,525 - Psest_2898 0.25 +0.0
3,094,525 - Psest_2898 0.25 +0.1
3,094,525 - Psest_2898 0.25 -1.0
3,094,566 + Psest_2898 0.39 +2.4
3,094,567 - Psest_2898 0.40 -0.0
3,094,567 - Psest_2898 0.40 -0.5
3,094,567 - Psest_2898 0.40 -2.1
3,094,567 - Psest_2898 0.40 +0.2
3,094,567 - Psest_2898 0.40 -1.2
3,094,567 - Psest_2898 0.40 -1.5
3,094,567 - Psest_2898 0.40 -1.9
3,094,567 - Psest_2898 0.40 -1.3
3,094,567 - Psest_2898 0.40 +0.0
3,094,567 - Psest_2898 0.40 +2.0
3,094,567 - Psest_2898 0.40 -0.9
3,094,591 + Psest_2898 0.48 +0.6
3,094,722 + -0.7
3,094,723 - +1.7
3,094,808 + Psest_2899 0.31 +0.0
3,094,809 - Psest_2899 0.31 -0.5

Or see this region's nucleotide sequence