Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1289

Experiment: Nickel (II) chloride 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1288 and Psest_1289 are separated by 19 nucleotidesPsest_1289 and Psest_1290 overlap by 4 nucleotides Psest_1288: Psest_1288 - Putative multicopper oxidases, at 1,393,733 to 1,395,103 _1288 Psest_1289: Psest_1289 - Cytosine/adenosine deaminases, at 1,395,123 to 1,395,605 _1289 Psest_1290: Psest_1290 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,395,602 to 1,396,699 _1290 Position (kb) 1395 1396Strain fitness (log2 ratio) -2 -1 0 1at 1394.400 kb on + strand, within Psest_1288at 1394.401 kb on - strand, within Psest_1288at 1394.417 kb on - strand, within Psest_1288at 1394.417 kb on - strand, within Psest_1288at 1394.462 kb on + strand, within Psest_1288at 1394.462 kb on + strand, within Psest_1288at 1394.462 kb on + strand, within Psest_1288at 1394.463 kb on - strand, within Psest_1288at 1394.463 kb on - strand, within Psest_1288at 1394.463 kb on - strand, within Psest_1288at 1394.765 kb on + strand, within Psest_1288at 1394.765 kb on + strand, within Psest_1288at 1394.765 kb on + strand, within Psest_1288at 1394.766 kb on - strand, within Psest_1288at 1394.767 kb on + strand, within Psest_1288at 1394.768 kb on - strand, within Psest_1288at 1394.768 kb on - strand, within Psest_1288at 1394.768 kb on - strand, within Psest_1288at 1394.858 kb on + strand, within Psest_1288at 1394.858 kb on + strand, within Psest_1288at 1394.858 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.975 kb on + strandat 1394.975 kb on + strandat 1394.975 kb on + strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1395.065 kb on - strandat 1395.099 kb on + strandat 1395.100 kb on - strandat 1395.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM
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1,394,400 + Psest_1288 0.49 -0.5
1,394,401 - Psest_1288 0.49 -1.8
1,394,417 - Psest_1288 0.50 +0.6
1,394,417 - Psest_1288 0.50 +1.2
1,394,462 + Psest_1288 0.53 +1.6
1,394,462 + Psest_1288 0.53 +0.5
1,394,462 + Psest_1288 0.53 +1.5
1,394,463 - Psest_1288 0.53 -1.1
1,394,463 - Psest_1288 0.53 -2.5
1,394,463 - Psest_1288 0.53 -0.1
1,394,765 + Psest_1288 0.75 -1.3
1,394,765 + Psest_1288 0.75 +1.5
1,394,765 + Psest_1288 0.75 +0.2
1,394,766 - Psest_1288 0.75 +0.9
1,394,767 + Psest_1288 0.75 -0.8
1,394,768 - Psest_1288 0.75 -1.9
1,394,768 - Psest_1288 0.75 -0.8
1,394,768 - Psest_1288 0.75 +0.2
1,394,858 + Psest_1288 0.82 -0.7
1,394,858 + Psest_1288 0.82 -0.4
1,394,858 - Psest_1288 0.82 -1.3
1,394,859 - Psest_1288 0.82 -1.1
1,394,859 - Psest_1288 0.82 +1.1
1,394,859 - Psest_1288 0.82 -0.9
1,394,859 - Psest_1288 0.82 +0.5
1,394,859 - Psest_1288 0.82 +0.6
1,394,859 - Psest_1288 0.82 -0.8
1,394,859 - Psest_1288 0.82 -0.6
1,394,859 - Psest_1288 0.82 -0.9
1,394,975 + +0.9
1,394,975 + +0.4
1,394,975 + +0.6
1,394,976 - -1.0
1,394,976 - +0.8
1,394,976 - +0.6
1,394,976 - -0.4
1,394,976 - +1.4
1,394,976 - -0.4
1,394,976 - -0.0
1,395,065 - +0.1
1,395,099 + -1.2
1,395,100 - +0.4
1,395,100 - -0.6

Or see this region's nucleotide sequence