Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3155

Experiment: Post-colonization (Day 14) - Cage1;Mouse3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 14) - Cage1;Mouse3
4,017,204	+		BT3153	0.19	-0.7
4,017,207	+		BT3153	0.20	-1.0
4,017,249	-		BT3153	0.32	+0.3
4,017,353	+		BT3153	0.62	-0.2
4,017,356	+		BT3153	0.63	+0.3
4,017,357	-		BT3153	0.63	-0.3
4,017,358	+				-1.7
4,017,358	+		BT3153	0.64	-0.9
4,017,360	+		BT3153	0.64	-0.0
4,017,363	-		BT3153	0.65	-2.2
4,017,364	+		BT3153	0.66	-1.2
4,017,365	-		BT3153	0.66	-1.0
4,017,365	-		BT3153	0.66	-2.3
4,017,377	+		BT3153	0.69	-0.9
4,017,547	+				-1.7
4,017,548	-				-2.9
4,017,617	-				-0.4
4,017,621	-				-0.4
4,017,624	+				+1.0
4,017,625	-				+0.6
4,017,630	-				+0.6
4,017,751	+		BT3154	0.19	-0.9
4,017,754	+		BT3154	0.20	-0.7
4,017,754	+		BT3154	0.20	-1.3
4,017,755	-		BT3154	0.20	-1.6
4,017,755	-		BT3154	0.20	-1.0
4,017,755	-		BT3154	0.20	-1.1
4,017,755	-		BT3154	0.20	-0.4
4,017,761	-		BT3154	0.22	+0.4
4,017,850	+		BT3154	0.49	-1.4
4,017,858	+		BT3154	0.52	-1.3
4,017,858	+		BT3154	0.52	-1.9
4,017,859	-		BT3154	0.52	+2.2
4,017,862	+		BT3154	0.53	-4.1
4,017,863	-		BT3154	0.53	-1.9
4,017,881	+		BT3154	0.59	-1.4
4,017,887	-		BT3154	0.61	-0.0
4,017,896	+		BT3154	0.63	-0.4
4,017,961	+		BT3154	0.83	-1.2
4,017,962	-		BT3154	0.83	-0.6
4,017,966	-		BT3154	0.85	-0.6
4,017,999	-				-2.1
4,018,022	+				-0.0
4,018,023	-				-1.0
4,018,032	-				-1.2
4,018,034	-				-0.6
4,018,053	+				-0.7
4,018,056	-				-1.5
4,018,070	+				-0.4
4,018,073	-				-0.0
4,018,075	-				-1.6
4,018,075	-				-1.4
4,018,105	+				-3.1
4,018,141	+				-1.4
4,018,141	+				-0.2
4,018,141	+				-2.7
4,018,143	+				-1.2
4,018,143	+				+0.6
4,018,144	-				-0.6
4,018,172	+				-2.6
4,018,177	+				-0.0
4,018,226	+				-1.0
4,018,231	-				-0.3
4,018,236	+				-3.1
4,018,237	-				+0.3
4,018,348	+				+1.6
4,018,358	+				-0.7
4,018,457	+		BT3155	0.11	-0.7
4,018,512	+		BT3155	0.14	+0.6
4,018,512	+		BT3155	0.14	-1.2
4,018,512	+		BT3155	0.14	-2.6
4,018,513	-		BT3155	0.14	-0.2
4,018,557	-		BT3155	0.15	+0.6
4,018,636	-		BT3155	0.19	-1.4
4,018,637	+		BT3155	0.19	-0.4
4,018,637	+		BT3155	0.19	-0.5
4,018,637	+		BT3155	0.19	-1.2
4,018,638	-		BT3155	0.19	+1.9
4,018,641	+		BT3155	0.19	-2.6
4,018,654	-		BT3155	0.19	+1.1
4,018,663	-		BT3155	0.20	-1.0
4,018,672	+		BT3155	0.20	-1.9
4,018,672	+		BT3155	0.20	-3.0
4,018,673	-		BT3155	0.20	-0.7
4,018,676	+		BT3155	0.20	-1.0
4,018,709	+		BT3155	0.22	-1.0
4,018,716	+		BT3155	0.22	-1.5
4,018,716	+		BT3155	0.22	-2.1
4,018,725	-		BT3155	0.22	+0.6
4,018,794	-		BT3155	0.25	-0.7
4,018,794	-		BT3155	0.25	-1.0
4,018,794	-		BT3155	0.25	-1.4
4,018,816	+		BT3155	0.26	-1.9
4,018,818	+		BT3155	0.26	-1.2
4,018,877	-		BT3155	0.29	+0.2
4,018,905	-		BT3155	0.30	-0.9
4,018,930	-		BT3155	0.31	-0.4
4,018,967	+		BT3155	0.32	-2.4
4,018,968	-		BT3155	0.32	+0.3
4,018,989	+		BT3155	0.33	-2.7
4,018,989	+		BT3155	0.33	-0.7
4,018,989	+		BT3155	0.33	-1.3
4,018,990	-		BT3155	0.33	-0.2
4,018,990	-		BT3155	0.33	+0.6
4,018,990	-		BT3155	0.33	+0.6
4,019,002	+		BT3155	0.34	-0.4
4,019,040	-		BT3155	0.35	-0.7
4,019,081	+		BT3155	0.37	-2.9
4,019,081	+		BT3155	0.37	-0.7
4,019,082	-		BT3155	0.37	-2.1
4,019,084	-		BT3155	0.37	-0.4
4,019,090	-		BT3155	0.37	+1.6
4,019,204	+		BT3155	0.42	-1.2
4,019,224	+		BT3155	0.43	+0.6
4,019,270	+		BT3155	0.45	-0.4
4,019,277	-		BT3155	0.45	-0.7
4,019,283	-		BT3155	0.45	-2.2
4,019,283	-		BT3155	0.45	-1.1
4,019,283	-		BT3155	0.45	+0.6
4,019,376	+		BT3155	0.49	-2.3
4,019,382	-		BT3155	0.49	-1.6
4,019,385	+		BT3155	0.50	+0.2
4,019,419	+		BT3155	0.51	-0.7
4,019,421	+		BT3155	0.51	-1.0
4,019,433	-		BT3155	0.52	-1.8
4,019,467	+		BT3155	0.53	-1.2
4,019,467	+		BT3155	0.53	-1.2
4,019,468	-		BT3155	0.53	-1.4
4,019,493	+		BT3155	0.54	-2.2
4,019,493	+		BT3155	0.54	-1.4
4,019,493	+		BT3155	0.54	-1.2
4,019,493	+				-0.0
4,019,494	-		BT3155	0.54	-1.2
4,019,494	-		BT3155	0.54	+0.1
4,019,496	+		BT3155	0.54	-3.0
4,019,496	+		BT3155	0.54	-2.3
4,019,496	+		BT3155	0.54	-2.0
4,019,516	-		BT3155	0.55	+0.8
4,019,516	-		BT3155	0.55	-0.2
4,019,517	+		BT3155	0.55	-2.4
4,019,517	+		BT3155	0.55	-2.0
4,019,518	-		BT3155	0.55	+0.3
4,019,518	-		BT3155	0.55	-1.2
4,019,535	+		BT3155	0.56	-2.7
4,019,596	+		BT3155	0.58	-1.1
4,019,632	-		BT3155	0.60	-2.8
4,019,646	-		BT3155	0.60	-0.9
4,019,649	-		BT3155	0.60	-1.2
4,019,677	+		BT3155	0.62	-1.2
4,019,678	-		BT3155	0.62	-0.4
4,019,685	-		BT3155	0.62	-1.3
4,019,685	-		BT3155	0.62	-1.9
4,019,687	+		BT3155	0.62	-0.7
4,019,687	+		BT3155	0.62	+0.6
4,019,711	+		BT3155	0.63	-0.7
4,019,721	+		BT3155	0.63	-0.4
4,019,722	-		BT3155	0.63	+1.4
4,019,775	+		BT3155	0.66	-1.0
4,019,775	+		BT3155	0.66	-0.9
4,019,775	+		BT3155	0.66	-1.2
4,019,775	+		BT3155	0.66	-1.2
4,019,776	-		BT3155	0.66	-0.2
4,019,776	-		BT3155	0.66	-0.2
4,019,798	+		BT3155	0.67	-1.9
4,019,844	-		BT3155	0.68	-1.0
4,019,844	-		BT3155	0.68	+0.6
4,019,847	-		BT3155	0.69	-0.0
4,019,991	-		BT3155	0.74	-1.4
4,019,991	-		BT3155	0.74	-1.4
4,020,024	-		BT3155	0.76	-0.7
4,020,117	+		BT3155	0.80	-0.9
4,020,133	+		BT3155	0.80	-2.2
4,020,133	+		BT3155	0.80	-0.7
4,020,134	-		BT3155	0.80	-1.5
4,020,143	+		BT3155	0.81	-1.0
4,020,143	+		BT3155	0.81	-0.4
4,020,164	-		BT3155	0.82	+0.8
4,020,169	-		BT3155	0.82	+0.8
4,020,214	-		BT3155	0.84	-2.0
4,020,335	+		BT3155	0.89	-0.4
4,020,347	+		BT3155	0.89	-0.4
4,020,348	-		BT3155	0.89	-1.4
4,020,437	+				-3.1
4,020,450	-				-1.9
4,020,563	-				-0.0
4,020,563	-				-0.0
4,020,564	+				-0.0
4,020,565	-				-0.2
4,020,586	-				-0.7
4,020,592	-				-2.4
4,020,592	-				-2.0
4,020,596	+				-6.0
4,020,597	-				-2.5
4,020,607	+				-1.7
4,020,607	+				-1.6
4,020,651	+				-1.0
4,020,652	-				-0.7
4,020,657	-				-0.4
4,020,673	+				-1.2
4,020,726	-				+0.6
4,020,726	-				-1.5
4,020,726	-				-2.4
4,020,726	-				-2.4
4,020,726	-				-0.9
4,020,727	+				-0.4
4,020,788	+				-4.4
4,020,808	+				-0.7
4,020,827	-				-2.9
4,020,880	-				-1.2
4,020,904	+				-0.0
4,020,904	+				-2.9
4,020,906	+				-0.0
4,020,906	+				-2.6
4,020,907	-				+1.6
4,020,907	-				+1.6
4,020,908	+				-3.3
4,020,937	-				-1.3
4,020,961	+				-1.1
4,020,974	-				-1.5
4,021,016	-				-0.0
4,021,055	-				-0.5
4,021,056	+				-3.3
4,021,057	-				-1.4
4,021,059	+				-2.7
4,021,102	-				+1.2
4,021,106	-				-0.4
4,021,106	-				-1.9
4,021,106	-				+1.0
4,021,119	-				+2.8
4,021,131	+				-3.1
4,021,144	+		BT3156	0.10	+0.6
4,021,201	-		BT3156	0.12	-0.0
4,021,216	+		BT3156	0.13	-1.2
4,021,217	-		BT3156	0.13	-0.0
4,021,222	-		BT3156	0.13	+0.6
4,021,222	-		BT3156	0.13	-0.9
4,021,222	-		BT3156	0.13	+0.8
4,021,249	+		BT3156	0.14	-2.2
4,021,367	+		BT3156	0.17	-0.0
4,021,412	-		BT3156	0.19	-0.0
4,021,474	+		BT3156	0.21	-4.0
4,021,490	+		BT3156	0.21	-2.7
4,021,532	-		BT3156	0.23	-0.4
4,021,561	-		BT3156	0.23	+0.4
4,021,584	+		BT3156	0.24	-3.2