Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0099

Experiment: Nickel (II) chloride 0.8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0097 and Psest_0098 are separated by 14 nucleotidesPsest_0098 and Psest_0099 are separated by 62 nucleotidesPsest_0099 and Psest_0100 are separated by 48 nucleotides Psest_0097: Psest_0097 - phosphonates metabolism transcriptional regulator PhnF, at 96,653 to 97,381 _0097 Psest_0098: Psest_0098 - phosphonate ABC transporter, permease protein PhnE, at 97,396 to 98,190 _0098 Psest_0099: Psest_0099 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 98,253 to 99,257 _0099 Psest_0100: Psest_0100 - phosphonate ABC transporter, ATP-binding protein, at 99,306 to 100,136 _0100 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 97.349 kb on - strandat 97.567 kb on + strand, within Psest_0098at 97.567 kb on + strand, within Psest_0098at 97.567 kb on + strand, within Psest_0098at 97.567 kb on + strand, within Psest_0098at 97.567 kb on + strand, within Psest_0098at 97.567 kb on + strand, within Psest_0098at 97.567 kb on + strand, within Psest_0098at 97.568 kb on - strand, within Psest_0098at 97.568 kb on - strand, within Psest_0098at 97.568 kb on - strand, within Psest_0098at 97.568 kb on - strand, within Psest_0098at 97.615 kb on + strand, within Psest_0098at 97.615 kb on + strand, within Psest_0098at 97.615 kb on + strand, within Psest_0098at 97.616 kb on - strand, within Psest_0098at 97.865 kb on + strand, within Psest_0098at 97.866 kb on - strand, within Psest_0098at 97.982 kb on + strand, within Psest_0098at 97.982 kb on + strand, within Psest_0098at 97.982 kb on + strand, within Psest_0098at 97.983 kb on - strand, within Psest_0098at 97.983 kb on - strand, within Psest_0098at 97.983 kb on - strand, within Psest_0098at 97.983 kb on - strand, within Psest_0098at 98.172 kb on + strandat 98.172 kb on + strandat 98.172 kb on + strandat 98.172 kb on + strandat 98.173 kb on - strandat 98.506 kb on + strand, within Psest_0099at 98.507 kb on - strand, within Psest_0099at 98.507 kb on - strand, within Psest_0099at 98.782 kb on + strand, within Psest_0099at 98.782 kb on + strand, within Psest_0099at 98.782 kb on + strand, within Psest_0099at 98.782 kb on + strand, within Psest_0099at 98.782 kb on + strand, within Psest_0099at 98.782 kb on + strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.783 kb on - strand, within Psest_0099at 98.911 kb on + strand, within Psest_0099at 98.911 kb on + strand, within Psest_0099at 98.911 kb on + strand, within Psest_0099at 98.911 kb on + strand, within Psest_0099at 98.912 kb on - strand, within Psest_0099at 98.912 kb on - strand, within Psest_0099at 98.912 kb on - strand, within Psest_0099at 98.912 kb on - strand, within Psest_0099at 98.914 kb on + strand, within Psest_0099at 98.915 kb on - strand, within Psest_0099at 98.915 kb on - strand, within Psest_0099at 99.042 kb on + strand, within Psest_0099at 99.392 kb on - strand, within Psest_0100at 99.481 kb on + strand, within Psest_0100at 99.493 kb on + strand, within Psest_0100at 99.493 kb on + strand, within Psest_0100at 99.868 kb on + strand, within Psest_0100at 99.869 kb on - strand, within Psest_0100at 99.869 kb on - strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.894 kb on + strand, within Psest_0100at 99.895 kb on - strand, within Psest_0100at 99.895 kb on - strand, within Psest_0100at 99.895 kb on - strand, within Psest_0100at 100.185 kb on - strandat 100.196 kb on + strandat 100.196 kb on + strandat 100.221 kb on + strandat 100.221 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
remove
97,349 - -0.0
97,567 + Psest_0098 0.22 +0.2
97,567 + Psest_0098 0.22 -0.7
97,567 + Psest_0098 0.22 -1.3
97,567 + Psest_0098 0.22 +1.0
97,567 + Psest_0098 0.22 -0.7
97,567 + Psest_0098 0.22 -2.0
97,567 + Psest_0098 0.22 +0.5
97,568 - Psest_0098 0.22 +1.7
97,568 - Psest_0098 0.22 -2.5
97,568 - Psest_0098 0.22 +0.3
97,568 - Psest_0098 0.22 -1.1
97,615 + Psest_0098 0.28 -1.3
97,615 + Psest_0098 0.28 +0.4
97,615 + Psest_0098 0.28 -2.7
97,616 - Psest_0098 0.28 +0.7
97,865 + Psest_0098 0.59 -1.3
97,866 - Psest_0098 0.59 +0.6
97,982 + Psest_0098 0.74 +0.8
97,982 + Psest_0098 0.74 -0.0
97,982 + Psest_0098 0.74 -0.6
97,983 - Psest_0098 0.74 +0.7
97,983 - Psest_0098 0.74 -1.8
97,983 - Psest_0098 0.74 +0.3
97,983 - Psest_0098 0.74 -0.1
98,172 + +1.1
98,172 + -2.1
98,172 + +0.2
98,172 + -0.4
98,173 - -2.4
98,506 + Psest_0099 0.25 -0.5
98,507 - Psest_0099 0.25 -0.3
98,507 - Psest_0099 0.25 +0.0
98,782 + Psest_0099 0.53 -1.1
98,782 + Psest_0099 0.53 -1.4
98,782 + Psest_0099 0.53 -0.2
98,782 + Psest_0099 0.53 +1.1
98,782 + Psest_0099 0.53 -1.1
98,782 + Psest_0099 0.53 -0.5
98,783 - Psest_0099 0.53 +0.1
98,783 - Psest_0099 0.53 -1.6
98,783 - Psest_0099 0.53 +0.2
98,783 - Psest_0099 0.53 +1.0
98,783 - Psest_0099 0.53 +0.4
98,783 - Psest_0099 0.53 -1.4
98,783 - Psest_0099 0.53 +0.4
98,911 + Psest_0099 0.65 +1.5
98,911 + Psest_0099 0.65 -0.7
98,911 + Psest_0099 0.65 -0.5
98,911 + Psest_0099 0.65 -0.7
98,912 - Psest_0099 0.66 -0.6
98,912 - Psest_0099 0.66 -0.9
98,912 - Psest_0099 0.66 -1.1
98,912 - Psest_0099 0.66 -0.3
98,914 + Psest_0099 0.66 +0.2
98,915 - Psest_0099 0.66 -0.1
98,915 - Psest_0099 0.66 -1.0
99,042 + Psest_0099 0.79 -0.6
99,392 - Psest_0100 0.10 -1.6
99,481 + Psest_0100 0.21 +1.2
99,493 + Psest_0100 0.23 -0.1
99,493 + Psest_0100 0.23 +1.5
99,868 + Psest_0100 0.68 +1.3
99,869 - Psest_0100 0.68 -0.2
99,869 - Psest_0100 0.68 -2.5
99,894 + Psest_0100 0.71 +0.4
99,894 + Psest_0100 0.71 -1.9
99,894 + Psest_0100 0.71 -0.7
99,894 + Psest_0100 0.71 +2.2
99,895 - Psest_0100 0.71 +0.7
99,895 - Psest_0100 0.71 -0.9
99,895 - Psest_0100 0.71 +2.1
100,185 - +0.3
100,196 + -1.1
100,196 + -0.2
100,221 + -0.7
100,221 + +1.7

Or see this region's nucleotide sequence