Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0840

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0839 and Psest_0840 are separated by 231 nucleotidesPsest_0840 and Psest_0841 are separated by 74 nucleotidesPsest_0841 and Psest_0842 overlap by 4 nucleotidesPsest_0842 and Psest_0843 are separated by 49 nucleotides Psest_0839: Psest_0839 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 909,329 to 910,006 _0839 Psest_0840: Psest_0840 - anaerobic ribonucleoside-triphosphate reductase, at 910,238 to 912,256 _0840 Psest_0841: Psest_0841 - hypothetical protein, at 912,331 to 912,486 _0841 Psest_0842: Psest_0842 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 912,483 to 913,178 _0842 Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604 _0843 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 909.721 kb on - strand, within Psest_0839at 909.846 kb on + strand, within Psest_0839at 909.846 kb on + strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.920 kb on - strand, within Psest_0839at 909.920 kb on - strand, within Psest_0839at 910.035 kb on + strandat 910.050 kb on + strandat 910.051 kb on - strandat 910.051 kb on - strandat 910.188 kb on + strandat 910.189 kb on - strandat 910.189 kb on - strandat 910.215 kb on + strandat 910.215 kb on + strandat 910.215 kb on + strandat 910.215 kb on + strandat 910.216 kb on - strandat 910.219 kb on + strandat 910.219 kb on + strandat 910.219 kb on + strandat 910.219 kb on + strandat 910.220 kb on - strandat 910.502 kb on + strand, within Psest_0840at 910.502 kb on + strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.573 kb on + strand, within Psest_0840at 910.573 kb on + strand, within Psest_0840at 910.574 kb on - strand, within Psest_0840at 910.584 kb on - strand, within Psest_0840at 910.584 kb on - strand, within Psest_0840at 910.584 kb on - strand, within Psest_0840at 910.673 kb on - strand, within Psest_0840at 910.673 kb on - strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.683 kb on - strand, within Psest_0840at 910.683 kb on - strand, within Psest_0840at 910.700 kb on + strand, within Psest_0840at 910.701 kb on - strand, within Psest_0840at 910.744 kb on + strand, within Psest_0840at 910.946 kb on - strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 911.021 kb on + strand, within Psest_0840at 911.021 kb on + strand, within Psest_0840at 911.021 kb on + strand, within Psest_0840at 911.021 kb on + strand, within Psest_0840at 911.021 kb on + strand, within Psest_0840at 911.021 kb on + strand, within Psest_0840at 911.022 kb on - strand, within Psest_0840at 911.022 kb on - strand, within Psest_0840at 911.022 kb on - strand, within Psest_0840at 911.120 kb on + strand, within Psest_0840at 911.120 kb on + strand, within Psest_0840at 911.120 kb on + strand, within Psest_0840at 911.121 kb on - strand, within Psest_0840at 911.121 kb on - strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.192 kb on + strand, within Psest_0840at 911.193 kb on - strand, within Psest_0840at 911.193 kb on - strand, within Psest_0840at 911.193 kb on - strand, within Psest_0840at 911.193 kb on - strand, within Psest_0840at 911.193 kb on - strand, within Psest_0840at 911.194 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.196 kb on + strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.197 kb on - strand, within Psest_0840at 911.255 kb on + strand, within Psest_0840at 911.255 kb on + strand, within Psest_0840at 911.255 kb on + strand, within Psest_0840at 911.256 kb on - strand, within Psest_0840at 911.256 kb on - strand, within Psest_0840at 911.336 kb on + strand, within Psest_0840at 911.513 kb on + strand, within Psest_0840at 911.514 kb on - strand, within Psest_0840at 911.828 kb on + strand, within Psest_0840at 911.828 kb on + strand, within Psest_0840at 911.828 kb on + strand, within Psest_0840at 911.829 kb on - strand, within Psest_0840at 911.829 kb on - strand, within Psest_0840at 911.933 kb on + strand, within Psest_0840at 911.936 kb on + strand, within Psest_0840at 911.936 kb on + strand, within Psest_0840at 911.937 kb on - strand, within Psest_0840at 911.937 kb on - strand, within Psest_0840at 911.937 kb on - strand, within Psest_0840at 912.020 kb on + strand, within Psest_0840at 912.020 kb on + strand, within Psest_0840at 912.020 kb on + strand, within Psest_0840at 912.021 kb on - strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.049 kb on + strand, within Psest_0840at 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.306 kb on - strandat 912.591 kb on + strand, within Psest_0842at 912.768 kb on + strand, within Psest_0842at 913.176 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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909,721 - Psest_0839 0.58 -1.3
909,846 + Psest_0839 0.76 +0.4
909,846 + Psest_0839 0.76 -0.1
909,847 - Psest_0839 0.76 -2.9
909,847 - Psest_0839 0.76 +1.3
909,847 - Psest_0839 0.76 +0.7
909,847 - Psest_0839 0.76 -1.8
909,847 - Psest_0839 0.76 -0.9
909,847 - Psest_0839 0.76 -0.3
909,919 + Psest_0839 0.87 -0.0
909,919 + Psest_0839 0.87 -2.2
909,919 + Psest_0839 0.87 -0.2
909,919 + Psest_0839 0.87 -0.1
909,919 + Psest_0839 0.87 +1.4
909,919 + Psest_0839 0.87 +1.7
909,920 - Psest_0839 0.87 -1.4
909,920 - Psest_0839 0.87 +0.7
910,035 + +0.8
910,050 + -1.8
910,051 - +1.4
910,051 - -0.8
910,188 + -0.9
910,189 - -0.3
910,189 - -0.3
910,215 + -0.8
910,215 + +0.7
910,215 + -0.9
910,215 + -1.5
910,216 - -0.6
910,219 + -0.7
910,219 + -0.6
910,219 + -1.3
910,219 + -0.6
910,220 - -0.6
910,502 + Psest_0840 0.13 +0.9
910,502 + Psest_0840 0.13 -1.0
910,503 - Psest_0840 0.13 -0.1
910,503 - Psest_0840 0.13 -1.8
910,503 - Psest_0840 0.13 -0.3
910,503 - Psest_0840 0.13 -1.2
910,573 + Psest_0840 0.17 +1.0
910,573 + Psest_0840 0.17 -0.1
910,574 - Psest_0840 0.17 -0.1
910,584 - Psest_0840 0.17 -0.5
910,584 - Psest_0840 0.17 -1.2
910,584 - Psest_0840 0.17 -0.4
910,673 - Psest_0840 0.22 -0.8
910,673 - Psest_0840 0.22 +1.7
910,682 + Psest_0840 0.22 +1.2
910,682 + Psest_0840 0.22 +0.1
910,682 + Psest_0840 0.22 -0.1
910,682 + Psest_0840 0.22 +0.6
910,682 + Psest_0840 0.22 +1.8
910,683 - Psest_0840 0.22 +0.7
910,683 - Psest_0840 0.22 -0.2
910,700 + Psest_0840 0.23 +0.5
910,701 - Psest_0840 0.23 +0.9
910,744 + Psest_0840 0.25 -0.6
910,946 - Psest_0840 0.35 -0.8
910,949 + Psest_0840 0.35 -0.1
910,949 + Psest_0840 0.35 -0.4
910,949 + Psest_0840 0.35 -0.3
910,949 + Psest_0840 0.35 -2.6
910,949 + Psest_0840 0.35 +0.0
910,950 - Psest_0840 0.35 -0.9
910,950 - Psest_0840 0.35 +0.7
910,950 - Psest_0840 0.35 -1.3
910,950 - Psest_0840 0.35 +1.2
911,021 + Psest_0840 0.39 -0.3
911,021 + Psest_0840 0.39 +0.4
911,021 + Psest_0840 0.39 +1.0
911,021 + Psest_0840 0.39 +0.1
911,021 + Psest_0840 0.39 +0.4
911,021 + Psest_0840 0.39 -0.4
911,022 - Psest_0840 0.39 +0.5
911,022 - Psest_0840 0.39 -2.4
911,022 - Psest_0840 0.39 +0.8
911,120 + Psest_0840 0.44 +0.3
911,120 + Psest_0840 0.44 -0.2
911,120 + Psest_0840 0.44 -2.2
911,121 - Psest_0840 0.44 +1.9
911,121 - Psest_0840 0.44 -0.8
911,192 + Psest_0840 0.47 -0.8
911,192 + Psest_0840 0.47 -2.3
911,192 + Psest_0840 0.47 -1.5
911,192 + Psest_0840 0.47 -0.4
911,192 + Psest_0840 0.47 -2.3
911,192 + Psest_0840 0.47 +1.3
911,192 + Psest_0840 0.47 -2.8
911,193 - Psest_0840 0.47 +2.1
911,193 - Psest_0840 0.47 +1.9
911,193 - Psest_0840 0.47 -0.2
911,193 - Psest_0840 0.47 +1.7
911,193 - Psest_0840 0.47 -0.1
911,194 + Psest_0840 0.47 +0.2
911,196 + Psest_0840 0.47 +1.0
911,196 + Psest_0840 0.47 -1.2
911,196 + Psest_0840 0.47 +0.2
911,196 + Psest_0840 0.47 +0.9
911,196 + Psest_0840 0.47 -0.1
911,196 + Psest_0840 0.47 -1.4
911,196 + Psest_0840 0.47 -0.4
911,196 + Psest_0840 0.47 -0.7
911,196 + Psest_0840 0.47 +0.5
911,196 + Psest_0840 0.47 +0.7
911,196 + Psest_0840 0.47 -0.8
911,196 + Psest_0840 0.47 +0.3
911,197 - Psest_0840 0.47 +0.5
911,197 - Psest_0840 0.47 +0.9
911,197 - Psest_0840 0.47 -0.4
911,197 - Psest_0840 0.47 -0.6
911,197 - Psest_0840 0.47 +0.4
911,197 - Psest_0840 0.47 -1.6
911,197 - Psest_0840 0.47 +0.9
911,197 - Psest_0840 0.47 -1.4
911,197 - Psest_0840 0.47 +1.9
911,197 - Psest_0840 0.47 -1.7
911,197 - Psest_0840 0.47 +0.2
911,197 - Psest_0840 0.47 +0.8
911,197 - Psest_0840 0.47 +0.2
911,197 - Psest_0840 0.47 -0.3
911,255 + Psest_0840 0.50 -2.6
911,255 + Psest_0840 0.50 -0.5
911,255 + Psest_0840 0.50 +1.1
911,256 - Psest_0840 0.50 +0.1
911,256 - Psest_0840 0.50 +1.6
911,336 + Psest_0840 0.54 -0.3
911,513 + Psest_0840 0.63 -0.7
911,514 - Psest_0840 0.63 -2.6
911,828 + Psest_0840 0.79 +0.3
911,828 + Psest_0840 0.79 -1.6
911,828 + Psest_0840 0.79 -0.0
911,829 - Psest_0840 0.79 +0.8
911,829 - Psest_0840 0.79 +0.1
911,933 + Psest_0840 0.84 +2.1
911,936 + Psest_0840 0.84 -0.3
911,936 + Psest_0840 0.84 -1.2
911,937 - Psest_0840 0.84 -0.5
911,937 - Psest_0840 0.84 +0.5
911,937 - Psest_0840 0.84 +0.4
912,020 + Psest_0840 0.88 -0.2
912,020 + Psest_0840 0.88 +0.1
912,020 + Psest_0840 0.88 -0.2
912,021 - Psest_0840 0.88 -1.8
912,047 + Psest_0840 0.90 +0.1
912,047 + Psest_0840 0.90 +0.1
912,047 + Psest_0840 0.90 -0.6
912,047 + Psest_0840 0.90 +2.3
912,047 + Psest_0840 0.90 +0.3
912,047 + Psest_0840 0.90 -1.5
912,047 + Psest_0840 0.90 -0.0
912,048 - Psest_0840 0.90 +0.5
912,048 - Psest_0840 0.90 +0.2
912,048 - Psest_0840 0.90 +4.5
912,048 - Psest_0840 0.90 -2.4
912,048 - Psest_0840 0.90 +1.7
912,048 - Psest_0840 0.90 -0.5
912,048 - Psest_0840 0.90 -1.0
912,048 - Psest_0840 0.90 -0.2
912,049 + Psest_0840 0.90 -0.3
912,301 + -0.1
912,301 + +1.9
912,301 + +0.1
912,302 - +0.2
912,302 - +1.2
912,306 - -2.0
912,591 + Psest_0842 0.16 +1.1
912,768 + Psest_0842 0.41 -0.4
913,176 + -1.5

Or see this region's nucleotide sequence