Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0554

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0552 and Psest_0553 are separated by 304 nucleotidesPsest_0553 and Psest_0554 are separated by 0 nucleotidesPsest_0554 and Psest_0555 are separated by 69 nucleotides Psest_0552: Psest_0552 - conserved hypothetical protein, proteobacterial, at 605,652 to 606,371 _0552 Psest_0553: Psest_0553 - DnaK suppressor protein, at 606,676 to 606,942 _0553 Psest_0554: Psest_0554 - Signal transduction histidine kinase, at 606,943 to 608,124 _0554 Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666 _0555 Position (kb) 606 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.004 kb on + strand, within Psest_0552at 606.005 kb on - strand, within Psest_0552at 606.005 kb on - strand, within Psest_0552at 606.005 kb on - strand, within Psest_0552at 606.065 kb on - strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.107 kb on - strand, within Psest_0552at 606.107 kb on - strand, within Psest_0552at 606.107 kb on - strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.231 kb on + strand, within Psest_0552at 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.359 kb on - strandat 606.359 kb on - strandat 606.359 kb on - strandat 606.359 kb on - strandat 606.371 kb on + strandat 606.372 kb on - strandat 606.372 kb on - strandat 606.372 kb on - strandat 606.459 kb on + strandat 606.459 kb on + strandat 606.459 kb on + strandat 606.460 kb on - strandat 606.460 kb on - strandat 606.489 kb on - strandat 606.537 kb on - strandat 606.537 kb on - strandat 606.905 kb on - strand, within Psest_0553at 607.011 kb on + strandat 607.097 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.361 kb on - strand, within Psest_0554at 607.403 kb on - strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.826 kb on + strand, within Psest_0554at 607.826 kb on + strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 608.163 kb on + strandat 608.163 kb on + strandat 608.163 kb on + strandat 608.164 kb on - strandat 608.255 kb on + strandat 608.255 kb on + strandat 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.406 kb on - strand, within Psest_0555at 608.406 kb on - strand, within Psest_0555at 608.406 kb on - strand, within Psest_0555at 608.468 kb on + strand, within Psest_0555at 608.468 kb on + strand, within Psest_0555at 608.468 kb on + strand, within Psest_0555at 608.469 kb on - strand, within Psest_0555at 608.471 kb on + strand, within Psest_0555at 608.472 kb on - strand, within Psest_0555at 608.472 kb on - strand, within Psest_0555at 608.654 kb on + strand, within Psest_0555at 608.654 kb on + strand, within Psest_0555at 608.654 kb on + strand, within Psest_0555at 608.655 kb on - strand, within Psest_0555at 608.655 kb on - strand, within Psest_0555at 608.919 kb on - strand, within Psest_0555at 608.942 kb on + strand, within Psest_0555at 608.942 kb on + strand, within Psest_0555at 608.942 kb on + strand, within Psest_0555at 608.943 kb on - strand, within Psest_0555at 608.943 kb on - strand, within Psest_0555at 608.943 kb on - strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.093 kb on - strand, within Psest_0555

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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606,001 + Psest_0552 0.48 +0.3
606,001 + Psest_0552 0.48 -0.2
606,001 + Psest_0552 0.48 +1.4
606,001 + Psest_0552 0.48 +0.5
606,001 + Psest_0552 0.48 -1.5
606,001 + Psest_0552 0.48 +0.2
606,001 + Psest_0552 0.48 +0.3
606,002 - Psest_0552 0.49 -2.8
606,002 - Psest_0552 0.49 +0.2
606,002 - Psest_0552 0.49 -0.4
606,002 - Psest_0552 0.49 +2.2
606,004 + Psest_0552 0.49 -1.6
606,005 - Psest_0552 0.49 -1.3
606,005 - Psest_0552 0.49 +1.1
606,005 - Psest_0552 0.49 +1.0
606,065 - Psest_0552 0.57 +0.5
606,106 + Psest_0552 0.63 +1.0
606,106 + Psest_0552 0.63 +0.9
606,106 + Psest_0552 0.63 -0.2
606,106 + Psest_0552 0.63 +2.2
606,107 - Psest_0552 0.63 +1.0
606,107 - Psest_0552 0.63 -3.5
606,107 - Psest_0552 0.63 -0.2
606,169 + Psest_0552 0.72 -0.8
606,169 + Psest_0552 0.72 +0.4
606,169 + Psest_0552 0.72 +0.6
606,169 + Psest_0552 0.72 +0.2
606,169 + Psest_0552 0.72 -0.0
606,169 + Psest_0552 0.72 +2.4
606,169 + Psest_0552 0.72 -0.7
606,170 - Psest_0552 0.72 -0.6
606,170 - Psest_0552 0.72 +0.8
606,170 - Psest_0552 0.72 +0.4
606,170 - Psest_0552 0.72 +0.7
606,170 - Psest_0552 0.72 +1.2
606,170 - Psest_0552 0.72 +2.1
606,170 - Psest_0552 0.72 +1.7
606,170 - Psest_0552 0.72 -0.2
606,170 - Psest_0552 0.72 -2.9
606,231 + Psest_0552 0.80 -1.2
606,358 + +0.2
606,358 + -0.8
606,358 + -1.3
606,358 + -0.2
606,358 + -0.3
606,358 + +1.5
606,359 - +0.5
606,359 - -0.9
606,359 - +0.7
606,359 - +1.0
606,371 + -0.3
606,372 - +0.2
606,372 - +0.7
606,372 - -0.6
606,459 + -1.1
606,459 + +0.5
606,459 + -1.3
606,460 - +0.6
606,460 - +1.5
606,489 - +0.5
606,537 - -1.6
606,537 - +0.1
606,905 - Psest_0553 0.86 -0.5
607,011 + -1.8
607,097 + Psest_0554 0.13 +1.1
607,360 + Psest_0554 0.35 +1.8
607,360 + Psest_0554 0.35 -0.2
607,360 + Psest_0554 0.35 +0.5
607,361 - Psest_0554 0.35 +0.4
607,403 - Psest_0554 0.39 -0.1
607,809 + Psest_0554 0.73 +1.2
607,809 + Psest_0554 0.73 +0.2
607,809 + Psest_0554 0.73 +0.3
607,809 + Psest_0554 0.73 +1.3
607,809 + Psest_0554 0.73 -0.1
607,809 + Psest_0554 0.73 +1.8
607,809 + Psest_0554 0.73 -0.6
607,809 + Psest_0554 0.73 +0.3
607,810 - Psest_0554 0.73 +1.3
607,810 - Psest_0554 0.73 -1.5
607,810 - Psest_0554 0.73 +0.2
607,810 - Psest_0554 0.73 -0.8
607,811 + Psest_0554 0.73 +0.0
607,811 + Psest_0554 0.73 -0.8
607,811 + Psest_0554 0.73 +3.0
607,811 + Psest_0554 0.73 +0.9
607,811 + Psest_0554 0.73 +0.7
607,811 + Psest_0554 0.73 +0.9
607,811 + Psest_0554 0.73 -1.1
607,811 + Psest_0554 0.73 +0.1
607,811 + Psest_0554 0.73 -1.1
607,811 + Psest_0554 0.73 +0.7
607,811 + Psest_0554 0.73 +1.7
607,811 + Psest_0554 0.73 +0.2
607,811 + Psest_0554 0.73 +1.1
607,811 + Psest_0554 0.73 +0.3
607,811 + Psest_0554 0.73 -0.3
607,811 + Psest_0554 0.73 -0.9
607,812 - Psest_0554 0.74 -2.1
607,812 - Psest_0554 0.74 +0.2
607,812 - Psest_0554 0.74 +1.0
607,812 - Psest_0554 0.74 -1.1
607,812 - Psest_0554 0.74 -1.0
607,812 - Psest_0554 0.74 -0.7
607,812 - Psest_0554 0.74 +0.7
607,826 + Psest_0554 0.75 +0.5
607,826 + Psest_0554 0.75 +1.2
607,827 - Psest_0554 0.75 +0.4
607,827 - Psest_0554 0.75 +0.0
607,827 - Psest_0554 0.75 +1.4
608,163 + +0.6
608,163 + -0.9
608,163 + +1.7
608,164 - +1.6
608,255 + -0.8
608,255 + +1.0
608,405 + Psest_0555 0.14 -0.4
608,405 + Psest_0555 0.14 -0.2
608,405 + Psest_0555 0.14 +0.2
608,405 + Psest_0555 0.14 -1.5
608,405 + Psest_0555 0.14 -1.6
608,405 + Psest_0555 0.14 -0.2
608,406 - Psest_0555 0.14 -0.0
608,406 - Psest_0555 0.14 -0.3
608,406 - Psest_0555 0.14 -0.0
608,468 + Psest_0555 0.19 -1.4
608,468 + Psest_0555 0.19 -0.0
608,468 + Psest_0555 0.19 +0.2
608,469 - Psest_0555 0.19 -1.0
608,471 + Psest_0555 0.19 +0.5
608,472 - Psest_0555 0.19 -0.5
608,472 - Psest_0555 0.19 +0.8
608,654 + Psest_0555 0.31 +0.8
608,654 + Psest_0555 0.31 -0.1
608,654 + Psest_0555 0.31 -0.9
608,655 - Psest_0555 0.31 +1.0
608,655 - Psest_0555 0.31 -0.8
608,919 - Psest_0555 0.49 -0.2
608,942 + Psest_0555 0.51 -0.3
608,942 + Psest_0555 0.51 -2.3
608,942 + Psest_0555 0.51 -1.8
608,943 - Psest_0555 0.51 -0.9
608,943 - Psest_0555 0.51 +0.7
608,943 - Psest_0555 0.51 -1.3
609,092 + Psest_0555 0.61 +1.3
609,092 + Psest_0555 0.61 -0.9
609,092 + Psest_0555 0.61 -1.8
609,093 - Psest_0555 0.61 +1.1

Or see this region's nucleotide sequence