Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3045

Experiment: Post-colonization (Day 12) - Cage6;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 12) - Cage6;Mouse1
3,853,843	-				-1.0
3,853,843	-				+2.2
3,853,862	+				-2.4
3,853,879	+				+0.9
3,853,903	+				-0.1
3,853,942	+				-2.5
3,853,945	-				+0.9
3,853,945	-				+1.3
3,853,948	+				+1.3
3,853,949	-				-0.6
3,853,949	-				+0.8
3,853,949	-				-0.3
3,853,960	+		BT3044	0.10	-1.0
3,853,960	+		BT3044	0.10	+0.5
3,853,961	-		BT3044	0.10	+0.1
3,853,987	+		BT3044	0.13	-1.5
3,853,988	-		BT3044	0.13	-0.7
3,853,993	+		BT3044	0.14	-0.3
3,853,994	-		BT3044	0.14	-1.2
3,854,029	+		BT3044	0.18	+2.7
3,854,030	-		BT3044	0.18	-0.6
3,854,112	+		BT3044	0.27	+0.0
3,854,138	-		BT3044	0.30	-1.8
3,854,158	+		BT3044	0.32	-1.0
3,854,159	-		BT3044	0.32	-0.9
3,854,161	+		BT3044	0.33	-0.5
3,854,162	-		BT3044	0.33	-0.7
3,854,164	+		BT3044	0.33	-0.4
3,854,165	-		BT3044	0.33	-0.2
3,854,191	+		BT3044	0.36	+0.3
3,854,191	+		BT3044	0.36	+0.1
3,854,192	-				+1.3
3,854,192	-		BT3044	0.36	-0.2
3,854,192	-		BT3044	0.36	-0.2
3,854,226	+		BT3044	0.40	-0.0
3,854,227	-		BT3044	0.40	-0.1
3,854,227	-		BT3044	0.40	+0.9
3,854,231	-		BT3044	0.41	-0.2
3,854,267	-		BT3044	0.45	-0.0
3,854,389	-		BT3044	0.58	-1.0
3,854,414	-		BT3044	0.61	+0.3
3,854,414	-		BT3044	0.61	-1.2
3,854,417	-		BT3044	0.61	+0.7
3,854,418	+		BT3044	0.62	-0.8
3,854,418	+		BT3044	0.62	-2.2
3,854,418	+		BT3044	0.62	+1.3
3,854,443	+		BT3044	0.64	+0.0
3,854,497	-		BT3044	0.70	+0.1
3,854,567	+		BT3044	0.78	+0.4
3,854,568	-		BT3044	0.78	+0.0
3,854,568	-		BT3044	0.78	-1.7
3,854,578	+		BT3044	0.80	-0.5
3,854,606	-		BT3044	0.83	-0.3
3,854,606	-		BT3044	0.83	-1.7
3,854,608	-		BT3044	0.83	-0.3
3,854,665	+		BT3044	0.89	-0.7
3,854,665	+		BT3044	0.89	-0.1
3,854,666	-		BT3044	0.90	-0.2
3,854,709	-				-0.7
3,854,736	+				+0.3
3,854,739	-				+0.5
3,854,842	+				-1.1
3,854,881	+				+0.5
3,854,881	+				-0.2
3,854,908	+				-0.2
3,854,941	+				+0.4
3,854,971	+				-0.0
3,854,972	-				-0.2
3,854,992	-				-0.9
3,854,992	-				-2.7
3,855,016	+		BT3045	0.11	-1.7
3,855,119	-		BT3045	0.16	+0.9
3,855,139	+		BT3045	0.17	+0.7
3,855,151	+		BT3045	0.17	+0.1
3,855,176	+		BT3045	0.19	-1.7
3,855,193	+		BT3045	0.19	-0.0
3,855,216	+		BT3045	0.21	+0.1
3,855,216	+		BT3045	0.21	-0.4
3,855,217	-		BT3045	0.21	+0.8
3,855,217	-		BT3045	0.21	+0.1
3,855,220	+		BT3045	0.21	-0.4
3,855,220	+		BT3045	0.21	-1.3
3,855,252	+		BT3045	0.22	+0.7
3,855,307	+		BT3045	0.25	-0.3
3,855,308	-		BT3045	0.25	-1.5
3,855,330	+		BT3045	0.26	+0.2
3,855,330	+		BT3045	0.26	-1.2
3,855,331	-		BT3045	0.26	+0.9
3,855,331	-		BT3045	0.26	-0.5
3,855,367	+		BT3045	0.28	+0.2
3,855,410	-		BT3045	0.30	+0.3
3,855,410	-		BT3045	0.30	+0.1
3,855,415	-		BT3045	0.31	-1.0
3,855,417	+		BT3045	0.31	-1.0
3,855,417	+		BT3045	0.31	-1.7
3,855,422	-		BT3045	0.31	-1.5
3,855,422	-				+0.3
3,855,442	+		BT3045	0.32	+0.6
3,855,443	-		BT3045	0.32	+0.9
3,855,477	+		BT3045	0.34	+0.6
3,855,478	-		BT3045	0.34	-0.2
3,855,494	+		BT3045	0.35	-0.6
3,855,494	+		BT3045	0.35	+1.3
3,855,495	-		BT3045	0.35	+1.3
3,855,556	+		BT3045	0.38	-1.1
3,855,581	-		BT3045	0.39	-0.7
3,855,672	+		BT3045	0.44	+1.5
3,855,672	+		BT3045	0.44	+1.0
3,855,676	+		BT3045	0.44	-0.2
3,855,677	-		BT3045	0.44	+2.3
3,855,677	-		BT3045	0.44	-1.0
3,855,679	+		BT3045	0.44	-1.0
3,855,745	+		BT3045	0.47	-0.4
3,855,749	-		BT3045	0.48	-0.6
3,855,763	+		BT3045	0.48	+1.1
3,855,764	-		BT3045	0.48	-0.2
3,855,766	-		BT3045	0.48	+0.3
3,855,769	+		BT3045	0.49	-1.1
3,855,781	+		BT3045	0.49	-0.2
3,855,781	+		BT3045	0.49	+1.1
3,855,784	+		BT3045	0.49	-0.1
3,855,785	-		BT3045	0.49	+0.3
3,855,819	+		BT3045	0.51	-0.4
3,855,836	+		BT3045	0.52	-2.0
3,855,837	-		BT3045	0.52	-0.1
3,855,837	-		BT3045	0.52	-1.0
3,855,837	-		BT3045	0.52	+1.2
3,855,925	+		BT3045	0.56	-1.1
3,855,925	+		BT3045	0.56	+2.3
3,855,928	-		BT3045	0.57	+1.1
3,856,019	-		BT3045	0.61	-1.1
3,856,054	-		BT3045	0.63	+0.7
3,856,097	+		BT3045	0.65	-2.4
3,856,151	-		BT3045	0.68	-0.3
3,856,157	-		BT3045	0.68	+0.8
3,856,174	-		BT3045	0.69	+0.2
3,856,179	+		BT3045	0.69	+0.0
3,856,205	-		BT3045	0.70	+1.9
3,856,206	+		BT3045	0.71	+1.3
3,856,207	-		BT3045	0.71	-2.3
3,856,213	+		BT3045	0.71	-0.7
3,856,224	+		BT3045	0.71	-0.7
3,856,225	-		BT3045	0.72	-1.7
3,856,313	+		BT3045	0.76	-0.7
3,856,333	-		BT3045	0.77	+2.2
3,856,348	-		BT3045	0.78	-1.0
3,856,385	-		BT3045	0.80	-0.8
3,856,443	+		BT3045	0.83	+1.8
3,856,450	+		BT3045	0.83	+0.9
3,856,455	+		BT3045	0.83	-0.6
3,856,455	+		BT3045	0.83	+1.1
3,856,456	-		BT3045	0.83	-0.2
3,856,459	+		BT3045	0.83	-0.5
3,856,460	-		BT3045	0.83	-0.8
3,856,513	+		BT3045	0.86	+0.5
3,856,514	-		BT3045	0.86	-3.1
3,856,604	+				-1.2
3,856,605	-				-0.1
3,856,607	+				+0.2
3,856,627	+				-1.5
3,856,627	+				+0.1
3,856,641	+				-1.3
3,856,641	+				+0.7
3,856,641	+				+1.7
3,856,649	-				+0.6
3,856,723	+				+0.5
3,856,724	-				+0.5
3,856,724	-				+0.5
3,856,724	-				+0.3
3,856,730	-				-1.0
3,856,771	-				-0.4
3,856,793	+				-1.4
3,856,813	+				+1.3
3,856,932	-				+1.8
3,856,949	+				-0.5
3,856,950	-				-0.2
3,856,950	-				+0.9
3,856,978	+				-0.5
3,856,978	+				-0.2
3,856,979	-				+1.3
3,856,985	-				-2.2
3,857,012	-				+1.7
3,857,090	-				+1.5
3,857,100	+				-0.7
3,857,100	+				-0.8
3,857,141	-		BT3046	0.10	-0.9
3,857,202	-		BT3046	0.12	+0.3
3,857,232	+		BT3046	0.13	+0.6
3,857,266	+		BT3046	0.14	+0.3
3,857,266	+		BT3046	0.14	-0.5
3,857,372	-		BT3046	0.18	-0.9
3,857,387	-		BT3046	0.18	+0.3
3,857,410	+		BT3046	0.19	-0.9
3,857,413	-		BT3046	0.19	+0.7
3,857,416	+		BT3046	0.19	+0.3
3,857,416	+		BT3046	0.19	+1.3
3,857,416	+		BT3046	0.19	+0.5
3,857,416	+		BT3046	0.19	-0.1
3,857,417	-		BT3046	0.19	-1.2
3,857,461	+		BT3046	0.20	+0.5
3,857,553	+		BT3046	0.23	-2.5
3,857,554	-		BT3046	0.23	-1.2
3,857,556	-		BT3046	0.23	-0.2
3,857,558	+		BT3046	0.24	+0.0
3,857,558	+		BT3046	0.24	-0.3
3,857,559	-		BT3046	0.24	-2.0
3,857,703	+		BT3046	0.28	-0.4
3,857,704	-		BT3046	0.28	-0.7
3,857,704	-		BT3046	0.28	+0.0
3,857,758	+		BT3046	0.30	+0.1