Experiment: Post-colonization (Day 12) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0695 and BT0696 are separated by 137 nucleotides BT0696 and BT0697 are separated by 151 nucleotides BT0697 and BT0698 are separated by 182 nucleotides
BT0695: BT0695 - ABC transporter, permease protein (NCBI ptt file), at 864,533 to 866,848
BT0695
BT0696: BT0696 - putative membrane protein (NCBI ptt file), at 866,986 to 868,356
BT0696
BT0697: BT0697 - putative phosphatase/phosphohexomutase (NCBI ptt file), at 868,508 to 869,155
BT0697
BT0698: BT0698 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file), at 869,338 to 870,159
BT0698
Position (kb) 866
867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 866.001 kb on + strand, within BT0695 at 866.072 kb on + strand, within BT0695 at 866.072 kb on + strand, within BT0695 at 866.149 kb on - strand, within BT0695 at 866.287 kb on + strand, within BT0695 at 866.288 kb on - strand, within BT0695 at 866.311 kb on + strand, within BT0695 at 866.311 kb on + strand, within BT0695 at 866.458 kb on - strand, within BT0695 at 866.511 kb on + strand, within BT0695 at 866.636 kb on + strand at 866.835 kb on + strand at 866.865 kb on + strand at 866.900 kb on - strand at 866.919 kb on - strand at 866.956 kb on + strand at 866.956 kb on + strand at 866.957 kb on - strand at 866.958 kb on + strand at 867.134 kb on - strand, within BT0696 at 867.207 kb on + strand, within BT0696 at 867.223 kb on - strand, within BT0696 at 867.372 kb on + strand, within BT0696 at 867.484 kb on + strand, within BT0696 at 867.498 kb on - strand, within BT0696 at 867.568 kb on - strand, within BT0696 at 867.694 kb on - strand, within BT0696 at 867.799 kb on - strand, within BT0696 at 867.805 kb on - strand, within BT0696 at 867.908 kb on + strand, within BT0696 at 867.995 kb on - strand, within BT0696 at 867.995 kb on - strand, within BT0696 at 868.063 kb on - strand, within BT0696 at 868.204 kb on - strand, within BT0696 at 868.257 kb on + strand at 868.307 kb on - strand at 868.365 kb on - strand at 868.508 kb on - strand at 868.577 kb on + strand, within BT0697 at 868.578 kb on - strand, within BT0697 at 868.748 kb on + strand, within BT0697 at 868.754 kb on + strand, within BT0697 at 868.985 kb on + strand, within BT0697 at 869.096 kb on + strand at 869.099 kb on - strand at 869.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage6;Mouse1 remove 866,001 + BT0695 0.63 -0.4 866,072 + BT0695 0.66 -1.3 866,072 + BT0695 0.66 +0.9 866,149 - BT0695 0.70 +1.1 866,287 + BT0695 0.76 +2.9 866,288 - BT0695 0.76 +0.3 866,311 + BT0695 0.77 -0.4 866,311 + BT0695 0.77 -0.1 866,458 - BT0695 0.83 +0.1 866,511 + BT0695 0.85 -2.8 866,636 + -0.7 866,835 + +0.0 866,865 + -0.5 866,900 - +0.3 866,919 - -1.4 866,956 + -0.3 866,956 + -1.5 866,957 - +0.9 866,958 + +1.3 867,134 - BT0696 0.11 -1.3 867,207 + BT0696 0.16 +1.1 867,223 - BT0696 0.17 +0.3 867,372 + BT0696 0.28 +0.9 867,484 + BT0696 0.36 -0.3 867,498 - BT0696 0.37 +0.6 867,568 - BT0696 0.42 -0.7 867,694 - BT0696 0.52 +0.3 867,799 - BT0696 0.59 +0.5 867,805 - BT0696 0.60 -0.0 867,908 + BT0696 0.67 -0.3 867,995 - BT0696 0.74 -0.3 867,995 - BT0696 0.74 +0.6 868,063 - BT0696 0.79 +0.7 868,204 - BT0696 0.89 -2.1 868,257 + -0.1 868,307 - -1.3 868,365 - +0.3 868,508 - +1.6 868,577 + BT0697 0.11 +0.3 868,578 - BT0697 0.11 -1.0 868,748 + BT0697 0.37 -0.3 868,754 + BT0697 0.38 +0.3 868,985 + BT0697 0.74 -0.7 869,096 + -1.7 869,099 - -1.3 869,104 - -1.0
Or see this region's nucleotide sequence