Experiment: Post-colonization (Day 12) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0263 and BT0264 are separated by 125 nucleotides BT0264 and BT0265 are separated by 41 nucleotides
BT0263: BT0263 - hypothetical protein (NCBI ptt file), at 293,299 to 294,711
BT0263
BT0264: BT0264 - conserved hypothetical protein (NCBI ptt file), at 294,837 to 296,585
BT0264
BT0265: BT0265 - conserved hypothetical protein (NCBI ptt file), at 296,627 to 298,108
BT0265
Position (kb) 294
295
296
297 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 293.885 kb on - strand, within BT0263 at 293.904 kb on + strand, within BT0263 at 293.904 kb on + strand, within BT0263 at 293.969 kb on - strand, within BT0263 at 293.978 kb on + strand, within BT0263 at 293.978 kb on + strand, within BT0263 at 293.979 kb on - strand, within BT0263 at 294.008 kb on - strand, within BT0263 at 294.032 kb on - strand, within BT0263 at 294.036 kb on + strand, within BT0263 at 294.046 kb on + strand, within BT0263 at 294.047 kb on - strand, within BT0263 at 294.064 kb on - strand, within BT0263 at 294.102 kb on + strand, within BT0263 at 294.102 kb on + strand, within BT0263 at 294.105 kb on - strand, within BT0263 at 294.258 kb on - strand, within BT0263 at 294.392 kb on + strand, within BT0263 at 294.468 kb on + strand, within BT0263 at 294.600 kb on + strand at 294.600 kb on + strand at 294.601 kb on - strand at 294.692 kb on + strand at 294.706 kb on + strand at 294.707 kb on - strand at 294.710 kb on - strand at 294.728 kb on + strand at 294.733 kb on - strand at 294.794 kb on + strand at 294.941 kb on - strand at 294.946 kb on + strand at 294.976 kb on - strand at 294.997 kb on - strand at 295.053 kb on - strand, within BT0264 at 295.134 kb on + strand, within BT0264 at 295.145 kb on + strand, within BT0264 at 295.148 kb on - strand, within BT0264 at 295.190 kb on + strand, within BT0264 at 295.197 kb on + strand, within BT0264 at 295.203 kb on - strand, within BT0264 at 295.276 kb on - strand, within BT0264 at 295.307 kb on + strand, within BT0264 at 295.308 kb on - strand, within BT0264 at 295.311 kb on - strand, within BT0264 at 295.311 kb on - strand, within BT0264 at 295.342 kb on + strand, within BT0264 at 295.450 kb on - strand, within BT0264 at 295.508 kb on + strand, within BT0264 at 295.526 kb on + strand, within BT0264 at 295.526 kb on + strand, within BT0264 at 295.616 kb on - strand, within BT0264 at 295.680 kb on + strand, within BT0264 at 295.715 kb on + strand, within BT0264 at 295.725 kb on + strand, within BT0264 at 295.728 kb on - strand, within BT0264 at 295.827 kb on - strand, within BT0264 at 296.114 kb on - strand, within BT0264 at 296.196 kb on - strand, within BT0264 at 296.196 kb on - strand, within BT0264 at 296.285 kb on + strand, within BT0264 at 296.294 kb on + strand, within BT0264 at 296.295 kb on - strand, within BT0264 at 296.295 kb on - strand, within BT0264 at 296.311 kb on + strand, within BT0264 at 296.321 kb on - strand, within BT0264 at 296.372 kb on - strand, within BT0264 at 296.410 kb on - strand, within BT0264 at 296.468 kb on + strand at 296.530 kb on - strand at 296.530 kb on - strand at 296.530 kb on - strand at 296.536 kb on - strand at 296.537 kb on + strand at 296.538 kb on - strand at 296.614 kb on - strand at 296.679 kb on - strand at 296.699 kb on - strand at 296.808 kb on + strand, within BT0265 at 296.816 kb on - strand, within BT0265 at 296.832 kb on - strand, within BT0265 at 296.974 kb on + strand, within BT0265 at 296.999 kb on + strand, within BT0265 at 297.121 kb on + strand, within BT0265 at 297.130 kb on - strand, within BT0265 at 297.130 kb on - strand, within BT0265 at 297.261 kb on + strand, within BT0265 at 297.262 kb on - strand, within BT0265 at 297.264 kb on - strand, within BT0265 at 297.265 kb on + strand, within BT0265 at 297.266 kb on - strand, within BT0265 at 297.300 kb on + strand, within BT0265 at 297.378 kb on - strand, within BT0265 at 297.448 kb on - strand, within BT0265 at 297.448 kb on - strand, within BT0265 at 297.451 kb on + strand, within BT0265 at 297.541 kb on + strand, within BT0265 at 297.541 kb on + strand, within BT0265 at 297.578 kb on - strand, within BT0265
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage6;Mouse1 remove 293,885 - BT0263 0.41 -1.3 293,904 + BT0263 0.43 -3.1 293,904 + BT0263 0.43 +0.2 293,969 - BT0263 0.47 -1.2 293,978 + BT0263 0.48 +1.3 293,978 + BT0263 0.48 +0.3 293,979 - BT0263 0.48 +0.5 294,008 - BT0263 0.50 -1.9 294,032 - BT0263 0.52 +1.0 294,036 + BT0263 0.52 -0.9 294,046 + BT0263 0.53 -1.5 294,047 - BT0263 0.53 +0.5 294,064 - BT0263 0.54 -1.5 294,102 + BT0263 0.57 -1.5 294,102 + BT0263 0.57 +0.6 294,105 - BT0263 0.57 -0.5 294,258 - BT0263 0.68 -1.2 294,392 + BT0263 0.77 -1.1 294,468 + BT0263 0.83 +0.3 294,600 + +2.0 294,600 + -2.7 294,601 - -1.5 294,692 + +0.7 294,706 + -1.1 294,707 - -2.2 294,710 - -1.3 294,728 + -2.4 294,733 - -1.2 294,794 + +1.3 294,941 - +2.0 294,946 + -0.7 294,976 - -0.5 294,997 - -0.6 295,053 - BT0264 0.12 -1.5 295,134 + BT0264 0.17 -1.5 295,145 + BT0264 0.18 +0.3 295,148 - BT0264 0.18 +0.7 295,190 + BT0264 0.20 +0.9 295,197 + BT0264 0.21 -2.8 295,203 - BT0264 0.21 -6.0 295,276 - BT0264 0.25 +1.6 295,307 + BT0264 0.27 -0.6 295,308 - BT0264 0.27 -0.3 295,311 - BT0264 0.27 -1.0 295,311 - BT0264 0.27 -2.2 295,342 + BT0264 0.29 -0.3 295,450 - BT0264 0.35 +0.1 295,508 + BT0264 0.38 -0.2 295,526 + BT0264 0.39 +0.1 295,526 + BT0264 0.39 +1.3 295,616 - BT0264 0.45 +0.3 295,680 + BT0264 0.48 -1.3 295,715 + BT0264 0.50 -1.5 295,725 + BT0264 0.51 +1.3 295,728 - BT0264 0.51 +0.3 295,827 - BT0264 0.57 -0.3 296,114 - BT0264 0.73 -1.0 296,196 - BT0264 0.78 -0.5 296,196 - BT0264 0.78 -1.7 296,285 + BT0264 0.83 +0.3 296,294 + BT0264 0.83 +0.3 296,295 - BT0264 0.83 -2.0 296,295 - BT0264 0.83 -0.3 296,311 + BT0264 0.84 +1.2 296,321 - BT0264 0.85 -1.3 296,372 - BT0264 0.88 +0.9 296,410 - BT0264 0.90 +1.2 296,468 + +1.3 296,530 - -0.5 296,530 - +0.3 296,530 - -0.3 296,536 - -1.3 296,537 + +1.3 296,538 - -1.3 296,614 - -0.1 296,679 - -1.7 296,699 - +0.3 296,808 + BT0265 0.12 -1.0 296,816 - BT0265 0.13 -0.4 296,832 - BT0265 0.14 -1.0 296,974 + BT0265 0.23 -1.9 296,999 + BT0265 0.25 -1.0 297,121 + BT0265 0.33 -0.6 297,130 - BT0265 0.34 -1.7 297,130 - BT0265 0.34 -2.0 297,261 + BT0265 0.43 +0.5 297,262 - BT0265 0.43 +0.1 297,264 - BT0265 0.43 -1.0 297,265 + BT0265 0.43 -0.1 297,266 - BT0265 0.43 +0.3 297,300 + BT0265 0.45 -1.3 297,378 - BT0265 0.51 -0.7 297,448 - BT0265 0.55 -0.6 297,448 - BT0265 0.55 +0.2 297,451 + BT0265 0.56 +0.2 297,541 + BT0265 0.62 +0.1 297,541 + BT0265 0.62 -1.3 297,578 - BT0265 0.64 +0.1
Or see this region's nucleotide sequence