Strain Fitness in Sinorhizobium meliloti 1021 around SMc04436

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02122 and SMc04436 are separated by 240 nucleotidesSMc04436 and SMc02121 are separated by 101 nucleotidesSMc02121 and SMc02120 are separated by 18 nucleotides SMc02122: SMc02122 - ferredoxin--NADP reductase, at 1,587,398 to 1,588,210 SMc02122 SMc04436: SMc04436 - hypothetical protein, at 1,588,451 to 1,588,729 SMc04436 SMc02121: SMc02121 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data), at 1,588,831 to 1,589,607 SMc02121 SMc02120: SMc02120 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2 (from data), at 1,589,626 to 1,590,780 SMc02120 Position (kb) 1588 1589Strain fitness (log2 ratio) -3 -2 -1 0 1at 1588.230 kb on + strandat 1588.241 kb on + strandat 1588.241 kb on + strandat 1588.247 kb on + strandat 1588.253 kb on - strandat 1588.344 kb on + strandat 1588.344 kb on + strandat 1588.345 kb on - strandat 1588.345 kb on - strandat 1588.401 kb on + strandat 1588.402 kb on - strandat 1588.402 kb on - strandat 1588.410 kb on + strandat 1588.410 kb on + strandat 1588.410 kb on + strandat 1588.410 kb on + strandat 1588.410 kb on + strandat 1588.433 kb on - strandat 1588.433 kb on - strandat 1588.527 kb on + strand, within SMc04436at 1588.539 kb on + strand, within SMc04436at 1588.637 kb on + strand, within SMc04436at 1588.637 kb on + strand, within SMc04436at 1588.637 kb on + strand, within SMc04436at 1588.638 kb on - strand, within SMc04436at 1588.738 kb on - strandat 1588.774 kb on - strandat 1589.160 kb on - strand, within SMc02121at 1589.526 kb on - strand, within SMc02121at 1589.538 kb on + strandat 1589.539 kb on - strandat 1589.539 kb on - strandat 1589.628 kb on - strandat 1589.670 kb on - strandat 1589.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,588,230 + +0.1
1,588,241 + +1.1
1,588,241 + +0.3
1,588,247 + +0.2
1,588,253 - -0.1
1,588,344 + -1.9
1,588,344 + +0.4
1,588,345 - -0.0
1,588,345 - +0.7
1,588,401 + -0.6
1,588,402 - -1.4
1,588,402 - -0.2
1,588,410 + -0.1
1,588,410 + +0.3
1,588,410 + +0.2
1,588,410 + -0.4
1,588,410 + +0.4
1,588,433 - +0.4
1,588,433 - -2.2
1,588,527 + SMc04436 0.27 +0.0
1,588,539 + SMc04436 0.32 -0.3
1,588,637 + SMc04436 0.67 -3.0
1,588,637 + SMc04436 0.67 -0.1
1,588,637 + SMc04436 0.67 -0.3
1,588,638 - SMc04436 0.67 -0.9
1,588,738 - -0.1
1,588,774 - +0.7
1,589,160 - SMc02121 0.42 -0.1
1,589,526 - SMc02121 0.89 -1.6
1,589,538 + +0.9
1,589,539 - -0.4
1,589,539 - -0.6
1,589,628 - -0.8
1,589,670 - -0.6
1,589,719 - +0.2

Or see this region's nucleotide sequence