Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02122 and SMc04436 are separated by 240 nucleotides SMc04436 and SMc02121 are separated by 101 nucleotides SMc02121 and SMc02120 are separated by 18 nucleotides
SMc02122: SMc02122 - ferredoxin--NADP reductase, at 1,587,398 to 1,588,210
SMc02122
SMc04436: SMc04436 - hypothetical protein, at 1,588,451 to 1,588,729
SMc04436
SMc02121: SMc02121 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) , at 1,588,831 to 1,589,607
SMc02121
SMc02120: SMc02120 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2 (from data) , at 1,589,626 to 1,590,780
SMc02120
Position (kb)
1588
1589 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1588.230 kb on + strand at 1588.241 kb on + strand at 1588.241 kb on + strand at 1588.247 kb on + strand at 1588.253 kb on - strand at 1588.344 kb on + strand at 1588.344 kb on + strand at 1588.345 kb on - strand at 1588.345 kb on - strand at 1588.401 kb on + strand at 1588.402 kb on - strand at 1588.402 kb on - strand at 1588.410 kb on + strand at 1588.410 kb on + strand at 1588.410 kb on + strand at 1588.410 kb on + strand at 1588.410 kb on + strand at 1588.433 kb on - strand at 1588.433 kb on - strand at 1588.527 kb on + strand, within SMc04436 at 1588.539 kb on + strand, within SMc04436 at 1588.637 kb on + strand, within SMc04436 at 1588.637 kb on + strand, within SMc04436 at 1588.637 kb on + strand, within SMc04436 at 1588.638 kb on - strand, within SMc04436 at 1588.738 kb on - strand at 1588.774 kb on - strand at 1589.160 kb on - strand, within SMc02121 at 1589.526 kb on - strand, within SMc02121 at 1589.538 kb on + strand at 1589.539 kb on - strand at 1589.539 kb on - strand at 1589.628 kb on - strand at 1589.670 kb on - strand at 1589.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,588,230 + +0.1 1,588,241 + +1.1 1,588,241 + +0.3 1,588,247 + +0.2 1,588,253 - -0.1 1,588,344 + -1.9 1,588,344 + +0.4 1,588,345 - -0.0 1,588,345 - +0.7 1,588,401 + -0.6 1,588,402 - -1.4 1,588,402 - -0.2 1,588,410 + -0.1 1,588,410 + +0.3 1,588,410 + +0.2 1,588,410 + -0.4 1,588,410 + +0.4 1,588,433 - +0.4 1,588,433 - -2.2 1,588,527 + SMc04436 0.27 +0.0 1,588,539 + SMc04436 0.32 -0.3 1,588,637 + SMc04436 0.67 -3.0 1,588,637 + SMc04436 0.67 -0.1 1,588,637 + SMc04436 0.67 -0.3 1,588,638 - SMc04436 0.67 -0.9 1,588,738 - -0.1 1,588,774 - +0.7 1,589,160 - SMc02121 0.42 -0.1 1,589,526 - SMc02121 0.89 -1.6 1,589,538 + +0.9 1,589,539 - -0.4 1,589,539 - -0.6 1,589,628 - -0.8 1,589,670 - -0.6 1,589,719 - +0.2
Or see this region's nucleotide sequence