Strain Fitness in Sinorhizobium meliloti 1021 around SMc02419

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02418 and SMc02419 are separated by 34 nucleotidesSMc02419 and SMc02420 are separated by 5 nucleotides SMc02418: SMc02418 - peptide transport system permease ABC transporter protein, at 2,790,852 to 2,791,820 SMc02418 SMc02419: SMc02419 - peptide transport system permease, at 2,791,855 to 2,792,805 SMc02419 SMc02420: SMc02420 - cytosine deaminase, at 2,792,811 to 2,794,004 SMc02420 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -1 0 1at 2791.041 kb on + strand, within SMc02418at 2791.042 kb on - strand, within SMc02418at 2791.042 kb on - strand, within SMc02418at 2791.042 kb on - strand, within SMc02418at 2791.042 kb on - strand, within SMc02418at 2791.231 kb on - strand, within SMc02418at 2791.232 kb on + strand, within SMc02418at 2791.233 kb on - strand, within SMc02418at 2791.233 kb on - strand, within SMc02418at 2791.320 kb on - strand, within SMc02418at 2791.320 kb on - strand, within SMc02418at 2791.551 kb on + strand, within SMc02418at 2791.551 kb on + strand, within SMc02418at 2791.551 kb on + strand, within SMc02418at 2791.552 kb on - strand, within SMc02418at 2791.652 kb on - strand, within SMc02418at 2791.726 kb on - strandat 2791.783 kb on - strandat 2791.783 kb on - strandat 2791.783 kb on - strandat 2791.790 kb on - strandat 2791.808 kb on + strandat 2792.036 kb on - strand, within SMc02419at 2792.082 kb on - strand, within SMc02419at 2792.107 kb on + strand, within SMc02419at 2792.107 kb on + strand, within SMc02419at 2792.108 kb on - strand, within SMc02419at 2792.108 kb on - strand, within SMc02419at 2792.428 kb on + strand, within SMc02419at 2792.428 kb on + strand, within SMc02419at 2792.428 kb on + strand, within SMc02419at 2792.429 kb on - strand, within SMc02419at 2792.476 kb on + strand, within SMc02419at 2792.476 kb on + strand, within SMc02419at 2792.476 kb on + strand, within SMc02419at 2792.533 kb on - strand, within SMc02419at 2792.803 kb on + strandat 2792.803 kb on + strandat 2792.810 kb on + strandat 2792.810 kb on + strandat 2792.810 kb on + strandat 2792.948 kb on + strand, within SMc02420at 2792.948 kb on + strand, within SMc02420at 2792.948 kb on + strand, within SMc02420at 2792.979 kb on - strand, within SMc02420at 2793.558 kb on + strand, within SMc02420at 2793.734 kb on + strand, within SMc02420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,791,041 + SMc02418 0.20 -0.6
2,791,042 - SMc02418 0.20 -0.5
2,791,042 - SMc02418 0.20 -0.2
2,791,042 - SMc02418 0.20 +0.1
2,791,042 - SMc02418 0.20 -0.1
2,791,231 - SMc02418 0.39 +1.1
2,791,232 + SMc02418 0.39 -0.1
2,791,233 - SMc02418 0.39 +0.8
2,791,233 - SMc02418 0.39 +0.1
2,791,320 - SMc02418 0.48 +1.3
2,791,320 - SMc02418 0.48 +0.7
2,791,551 + SMc02418 0.72 +0.3
2,791,551 + SMc02418 0.72 -1.2
2,791,551 + SMc02418 0.72 -0.2
2,791,552 - SMc02418 0.72 -0.3
2,791,652 - SMc02418 0.83 +0.6
2,791,726 - +0.2
2,791,783 - +0.7
2,791,783 - +0.3
2,791,783 - +0.1
2,791,790 - -0.1
2,791,808 + -0.0
2,792,036 - SMc02419 0.19 -1.4
2,792,082 - SMc02419 0.24 +0.2
2,792,107 + SMc02419 0.26 -0.0
2,792,107 + SMc02419 0.26 -0.2
2,792,108 - SMc02419 0.27 -1.0
2,792,108 - SMc02419 0.27 -1.2
2,792,428 + SMc02419 0.60 +0.3
2,792,428 + SMc02419 0.60 -1.2
2,792,428 + SMc02419 0.60 +0.6
2,792,429 - SMc02419 0.60 -0.3
2,792,476 + SMc02419 0.65 -0.8
2,792,476 + SMc02419 0.65 -0.3
2,792,476 + SMc02419 0.65 -1.0
2,792,533 - SMc02419 0.71 -0.5
2,792,803 + -0.5
2,792,803 + +0.1
2,792,810 + +0.3
2,792,810 + -0.3
2,792,810 + -0.1
2,792,948 + SMc02420 0.11 +0.6
2,792,948 + SMc02420 0.11 -0.6
2,792,948 + SMc02420 0.11 -0.2
2,792,979 - SMc02420 0.14 +0.2
2,793,558 + SMc02420 0.63 +1.7
2,793,734 + SMc02420 0.77 +1.7

Or see this region's nucleotide sequence