Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21552

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21551 and SM_b21552 are separated by 168 nucleotidesSM_b21552 and SM_b21554 are separated by 202 nucleotides SM_b21551: SM_b21551 - hypothetical protein, at 1,090,398 to 1,091,324 _b21551 SM_b21552: SM_b21552 - aminoglycoside 6'-N-acetyltransferase, amikacin resistance protein, at 1,091,493 to 1,091,996 _b21552 SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741 _b21554 Position (kb) 1091 1092Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1090.601 kb on - strand, within SM_b21551at 1091.322 kb on + strandat 1091.323 kb on - strandat 1091.328 kb on - strandat 1091.333 kb on + strandat 1091.333 kb on + strandat 1091.484 kb on + strandat 1091.485 kb on - strandat 1091.552 kb on + strand, within SM_b21552at 1091.552 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.575 kb on - strand, within SM_b21552at 1091.616 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.667 kb on + strand, within SM_b21552at 1091.669 kb on + strand, within SM_b21552at 1091.670 kb on - strand, within SM_b21552at 1091.670 kb on - strand, within SM_b21552at 1091.715 kb on + strand, within SM_b21552at 1091.715 kb on + strand, within SM_b21552at 1091.737 kb on + strand, within SM_b21552at 1091.737 kb on + strand, within SM_b21552at 1091.738 kb on - strand, within SM_b21552at 1091.767 kb on + strand, within SM_b21552at 1091.767 kb on + strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.771 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.827 kb on - strand, within SM_b21552at 1091.827 kb on - strandat 1091.827 kb on - strand, within SM_b21552at 1091.827 kb on - strand, within SM_b21552at 1091.882 kb on + strand, within SM_b21552at 1091.896 kb on + strand, within SM_b21552at 1091.897 kb on - strandat 1091.900 kb on + strand, within SM_b21552at 1091.971 kb on + strandat 1091.972 kb on - strandat 1091.972 kb on - strandat 1091.972 kb on - strandat 1091.994 kb on + strandat 1091.995 kb on - strandat 1092.010 kb on + strandat 1092.010 kb on + strandat 1092.109 kb on + strandat 1092.152 kb on + strandat 1092.153 kb on - strandat 1092.218 kb on + strandat 1092.219 kb on - strandat 1092.251 kb on + strandat 1092.251 kb on + strandat 1092.252 kb on - strandat 1092.374 kb on + strand, within SM_b21554at 1092.375 kb on - strand, within SM_b21554at 1092.375 kb on - strand, within SM_b21554at 1092.424 kb on + strand, within SM_b21554at 1092.488 kb on + strand, within SM_b21554at 1092.601 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.621 kb on - strand, within SM_b21554at 1092.628 kb on - strand, within SM_b21554at 1092.817 kb on + strandat 1092.849 kb on + strandat 1092.850 kb on - strandat 1092.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,090,601 - SM_b21551 0.22 +0.2
1,091,322 + +2.9
1,091,323 - +0.9
1,091,328 - -0.2
1,091,333 + +0.1
1,091,333 + -0.0
1,091,484 + +0.4
1,091,485 - +0.2
1,091,552 + SM_b21552 0.12 -0.2
1,091,552 + SM_b21552 0.12 +0.1
1,091,561 + SM_b21552 0.13 -0.3
1,091,561 + SM_b21552 0.13 -2.4
1,091,561 + SM_b21552 0.13 +0.3
1,091,575 - SM_b21552 0.16 -0.5
1,091,616 + SM_b21552 0.24 -1.1
1,091,659 + SM_b21552 0.33 -0.2
1,091,659 + SM_b21552 0.33 -0.2
1,091,659 + SM_b21552 0.33 -0.2
1,091,667 + SM_b21552 0.35 +0.6
1,091,669 + SM_b21552 0.35 -1.4
1,091,670 - SM_b21552 0.35 -0.2
1,091,670 - SM_b21552 0.35 -0.1
1,091,715 + SM_b21552 0.44 +0.3
1,091,715 + SM_b21552 0.44 -0.5
1,091,737 + SM_b21552 0.48 +0.2
1,091,737 + SM_b21552 0.48 +0.4
1,091,738 - SM_b21552 0.49 -0.7
1,091,767 + SM_b21552 0.54 +0.2
1,091,767 + SM_b21552 0.54 -1.0
1,091,768 - SM_b21552 0.55 +0.6
1,091,768 - SM_b21552 0.55 -0.4
1,091,768 - SM_b21552 0.55 -0.4
1,091,768 - SM_b21552 0.55 -0.4
1,091,771 + SM_b21552 0.55 -0.4
1,091,813 + SM_b21552 0.63 +0.1
1,091,813 + SM_b21552 0.63 -0.2
1,091,813 + SM_b21552 0.63 +0.3
1,091,826 + SM_b21552 0.66 -0.7
1,091,826 + SM_b21552 0.66 -1.8
1,091,826 + SM_b21552 0.66 +0.2
1,091,826 + SM_b21552 0.66 +0.6
1,091,826 + SM_b21552 0.66 -0.9
1,091,827 - SM_b21552 0.66 -0.1
1,091,827 - -0.7
1,091,827 - SM_b21552 0.66 -1.0
1,091,827 - SM_b21552 0.66 -0.3
1,091,882 + SM_b21552 0.77 -1.0
1,091,896 + SM_b21552 0.80 -1.4
1,091,897 - -0.7
1,091,900 + SM_b21552 0.81 -0.0
1,091,971 + +0.4
1,091,972 - -1.0
1,091,972 - +0.9
1,091,972 - +0.0
1,091,994 + -0.4
1,091,995 - +0.5
1,092,010 + +0.6
1,092,010 + +0.3
1,092,109 + -0.3
1,092,152 + -0.4
1,092,153 - -0.6
1,092,218 + +0.1
1,092,219 - -0.2
1,092,251 + -0.0
1,092,251 + -0.5
1,092,252 - -0.6
1,092,374 + SM_b21554 0.32 -0.5
1,092,375 - SM_b21554 0.32 -0.0
1,092,375 - SM_b21554 0.32 +0.5
1,092,424 + SM_b21554 0.41 -0.3
1,092,488 + SM_b21554 0.53 +1.6
1,092,601 + SM_b21554 0.74 +0.3
1,092,620 + SM_b21554 0.78 +0.9
1,092,620 + SM_b21554 0.78 -0.7
1,092,620 + SM_b21554 0.78 +0.5
1,092,621 - SM_b21554 0.78 +0.4
1,092,628 - SM_b21554 0.79 +0.1
1,092,817 + -0.3
1,092,849 + -0.2
1,092,850 - +0.5
1,092,983 - -1.4

Or see this region's nucleotide sequence