Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20134

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20133 and SM_b20134 are separated by 202 nucleotidesSM_b20134 and SM_b20135 are separated by 78 nucleotidesSM_b20135 and SM_b20136 are separated by 30 nucleotides SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344 _b20133 SM_b20134: SM_b20134 - permease, at 147,547 to 148,938 _b20134 SM_b20135: SM_b20135 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 149,017 to 149,649 _b20135 SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053 _b20136 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1 2at 146.947 kb on - strand, within SM_b20133at 147.148 kb on + strand, within SM_b20133at 147.149 kb on - strand, within SM_b20133at 147.149 kb on - strand, within SM_b20133at 147.151 kb on + strand, within SM_b20133at 147.152 kb on - strand, within SM_b20133at 147.152 kb on - strand, within SM_b20133at 147.248 kb on + strandat 147.248 kb on + strandat 147.248 kb on + strandat 147.248 kb on + strandat 147.482 kb on + strandat 147.765 kb on - strand, within SM_b20134at 147.866 kb on + strand, within SM_b20134at 147.866 kb on + strand, within SM_b20134at 147.867 kb on - strand, within SM_b20134at 147.998 kb on + strand, within SM_b20134at 147.998 kb on + strand, within SM_b20134at 147.998 kb on + strand, within SM_b20134at 147.999 kb on - strand, within SM_b20134at 148.007 kb on + strand, within SM_b20134at 148.007 kb on + strand, within SM_b20134at 148.007 kb on + strand, within SM_b20134at 148.007 kb on + strand, within SM_b20134at 148.237 kb on - strand, within SM_b20134at 148.277 kb on - strand, within SM_b20134at 148.277 kb on - strand, within SM_b20134at 148.444 kb on + strandat 148.445 kb on - strand, within SM_b20134at 148.562 kb on + strand, within SM_b20134at 148.847 kb on + strandat 148.848 kb on - strandat 148.848 kb on - strandat 148.912 kb on - strandat 148.933 kb on - strandat 149.174 kb on + strand, within SM_b20135at 149.174 kb on + strand, within SM_b20135at 149.174 kb on + strand, within SM_b20135at 149.302 kb on + strand, within SM_b20135at 149.336 kb on - strand, within SM_b20135at 149.582 kb on + strand, within SM_b20135at 149.583 kb on - strand, within SM_b20135at 149.583 kb on - strand, within SM_b20135at 149.583 kb on - strand, within SM_b20135at 149.583 kb on - strand, within SM_b20135at 149.584 kb on + strand, within SM_b20135at 149.672 kb on + strandat 149.681 kb on + strandat 149.681 kb on + strandat 149.682 kb on - strandat 149.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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146,947 - SM_b20133 0.62 -0.1
147,148 + SM_b20133 0.81 +0.5
147,149 - SM_b20133 0.81 -0.6
147,149 - SM_b20133 0.81 -0.1
147,151 + SM_b20133 0.82 +0.8
147,152 - SM_b20133 0.82 +0.1
147,152 - SM_b20133 0.82 -0.7
147,248 + +0.2
147,248 + +0.4
147,248 + -0.3
147,248 + +0.1
147,482 + +0.3
147,765 - SM_b20134 0.16 -0.0
147,866 + SM_b20134 0.23 +0.3
147,866 + SM_b20134 0.23 -0.2
147,867 - SM_b20134 0.23 +0.8
147,998 + SM_b20134 0.32 +0.1
147,998 + SM_b20134 0.32 -0.1
147,998 + SM_b20134 0.32 +0.3
147,999 - SM_b20134 0.32 +0.6
148,007 + SM_b20134 0.33 +0.1
148,007 + SM_b20134 0.33 -0.2
148,007 + SM_b20134 0.33 +1.0
148,007 + SM_b20134 0.33 +0.8
148,237 - SM_b20134 0.50 +0.5
148,277 - SM_b20134 0.52 +0.9
148,277 - SM_b20134 0.52 -0.0
148,444 + +0.1
148,445 - SM_b20134 0.65 -1.2
148,562 + SM_b20134 0.73 +2.1
148,847 + +0.2
148,848 - -0.4
148,848 - -0.5
148,912 - -0.3
148,933 - -0.3
149,174 + SM_b20135 0.25 +0.7
149,174 + SM_b20135 0.25 -0.4
149,174 + SM_b20135 0.25 -0.2
149,302 + SM_b20135 0.45 -0.7
149,336 - SM_b20135 0.50 +0.3
149,582 + SM_b20135 0.89 +0.1
149,583 - SM_b20135 0.89 -0.5
149,583 - SM_b20135 0.89 +0.1
149,583 - SM_b20135 0.89 -0.5
149,583 - SM_b20135 0.89 +0.5
149,584 + SM_b20135 0.90 +0.1
149,672 + +0.7
149,681 + -0.2
149,681 + -0.2
149,682 - +0.0
149,682 - +0.2

Or see this region's nucleotide sequence