Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20133 and SM_b20134 are separated by 202 nucleotides SM_b20134 and SM_b20135 are separated by 78 nucleotides SM_b20135 and SM_b20136 are separated by 30 nucleotides
SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344
_b20133
SM_b20134: SM_b20134 - permease, at 147,547 to 148,938
_b20134
SM_b20135: SM_b20135 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 149,017 to 149,649
_b20135
SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053
_b20136
Position (kb)
147
148
149 Strain fitness (log2 ratio)
-1
0
1
2 at 146.947 kb on - strand, within SM_b20133 at 147.148 kb on + strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.151 kb on + strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.482 kb on + strand at 147.765 kb on - strand, within SM_b20134 at 147.866 kb on + strand, within SM_b20134 at 147.866 kb on + strand, within SM_b20134 at 147.867 kb on - strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.999 kb on - strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.237 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134 at 148.444 kb on + strand at 148.445 kb on - strand, within SM_b20134 at 148.562 kb on + strand, within SM_b20134 at 148.847 kb on + strand at 148.848 kb on - strand at 148.848 kb on - strand at 148.912 kb on - strand at 148.933 kb on - strand at 149.174 kb on + strand, within SM_b20135 at 149.174 kb on + strand, within SM_b20135 at 149.174 kb on + strand, within SM_b20135 at 149.302 kb on + strand, within SM_b20135 at 149.336 kb on - strand, within SM_b20135 at 149.582 kb on + strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.584 kb on + strand, within SM_b20135 at 149.672 kb on + strand at 149.681 kb on + strand at 149.681 kb on + strand at 149.682 kb on - strand at 149.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 146,947 - SM_b20133 0.62 -0.1 147,148 + SM_b20133 0.81 +0.5 147,149 - SM_b20133 0.81 -0.6 147,149 - SM_b20133 0.81 -0.1 147,151 + SM_b20133 0.82 +0.8 147,152 - SM_b20133 0.82 +0.1 147,152 - SM_b20133 0.82 -0.7 147,248 + +0.2 147,248 + +0.4 147,248 + -0.3 147,248 + +0.1 147,482 + +0.3 147,765 - SM_b20134 0.16 -0.0 147,866 + SM_b20134 0.23 +0.3 147,866 + SM_b20134 0.23 -0.2 147,867 - SM_b20134 0.23 +0.8 147,998 + SM_b20134 0.32 +0.1 147,998 + SM_b20134 0.32 -0.1 147,998 + SM_b20134 0.32 +0.3 147,999 - SM_b20134 0.32 +0.6 148,007 + SM_b20134 0.33 +0.1 148,007 + SM_b20134 0.33 -0.2 148,007 + SM_b20134 0.33 +1.0 148,007 + SM_b20134 0.33 +0.8 148,237 - SM_b20134 0.50 +0.5 148,277 - SM_b20134 0.52 +0.9 148,277 - SM_b20134 0.52 -0.0 148,444 + +0.1 148,445 - SM_b20134 0.65 -1.2 148,562 + SM_b20134 0.73 +2.1 148,847 + +0.2 148,848 - -0.4 148,848 - -0.5 148,912 - -0.3 148,933 - -0.3 149,174 + SM_b20135 0.25 +0.7 149,174 + SM_b20135 0.25 -0.4 149,174 + SM_b20135 0.25 -0.2 149,302 + SM_b20135 0.45 -0.7 149,336 - SM_b20135 0.50 +0.3 149,582 + SM_b20135 0.89 +0.1 149,583 - SM_b20135 0.89 -0.5 149,583 - SM_b20135 0.89 +0.1 149,583 - SM_b20135 0.89 -0.5 149,583 - SM_b20135 0.89 +0.5 149,584 + SM_b20135 0.90 +0.1 149,672 + +0.7 149,681 + -0.2 149,681 + -0.2 149,682 - +0.0 149,682 - +0.2
Or see this region's nucleotide sequence