Experiment: Nickel (II) chloride 0.75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0703 and Psest_0704 are separated by 217 nucleotides Psest_0704 and Psest_0705 are separated by 40 nucleotides
Psest_0703: Psest_0703 - diguanylate cyclase (GGDEF) domain, at 770,972 to 772,567
_0703
Psest_0704: Psest_0704 - Uncharacterized protein conserved in bacteria, at 772,785 to 773,843
_0704
Psest_0705: Psest_0705 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 773,884 to 775,278
_0705
Position (kb)
772
773
774 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 772.035 kb on - strand, within Psest_0703 at 772.035 kb on - strand, within Psest_0703 at 772.166 kb on + strand, within Psest_0703 at 772.205 kb on - strand, within Psest_0703 at 772.205 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.207 kb on - strand, within Psest_0703 at 772.209 kb on - strand, within Psest_0703 at 772.209 kb on - strand, within Psest_0703 at 772.284 kb on + strand, within Psest_0703 at 772.284 kb on + strand, within Psest_0703 at 772.456 kb on - strand at 772.706 kb on + strand at 772.706 kb on + strand at 772.707 kb on - strand at 772.707 kb on - strand at 772.708 kb on + strand at 772.708 kb on + strand at 772.708 kb on + strand at 772.708 kb on + strand at 772.708 kb on + strand at 772.709 kb on - strand at 772.902 kb on + strand, within Psest_0704 at 772.902 kb on + strand, within Psest_0704 at 772.902 kb on + strand, within Psest_0704 at 772.952 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.370 kb on + strand, within Psest_0704 at 773.371 kb on - strand, within Psest_0704 at 773.371 kb on - strand, within Psest_0704 at 773.371 kb on - strand, within Psest_0704 at 773.371 kb on - strand, within Psest_0704 at 773.784 kb on + strand at 773.784 kb on + strand at 773.784 kb on + strand at 773.784 kb on + strand at 773.785 kb on - strand at 773.785 kb on - strand at 774.132 kb on + strand, within Psest_0705 at 774.132 kb on + strand, within Psest_0705 at 774.132 kb on + strand, within Psest_0705 at 774.133 kb on - strand, within Psest_0705 at 774.133 kb on - strand, within Psest_0705 at 774.134 kb on + strand, within Psest_0705 at 774.135 kb on - strand, within Psest_0705 at 774.135 kb on - strand, within Psest_0705 at 774.186 kb on - strand, within Psest_0705 at 774.186 kb on - strand, within Psest_0705 at 774.344 kb on + strand, within Psest_0705 at 774.344 kb on + strand, within Psest_0705 at 774.344 kb on + strand, within Psest_0705 at 774.741 kb on + strand, within Psest_0705 at 774.742 kb on - strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.743 kb on + strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705 at 774.744 kb on - strand, within Psest_0705
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.75 mM remove 772,035 - Psest_0703 0.67 -1.6 772,035 - Psest_0703 0.67 -1.1 772,166 + Psest_0703 0.75 +0.3 772,205 - Psest_0703 0.77 +0.0 772,205 - Psest_0703 0.77 +0.1 772,207 - Psest_0703 0.77 +1.0 772,207 - Psest_0703 0.77 +0.8 772,207 - Psest_0703 0.77 -1.0 772,207 - Psest_0703 0.77 +1.2 772,207 - Psest_0703 0.77 +0.5 772,207 - Psest_0703 0.77 -0.9 772,207 - Psest_0703 0.77 -1.0 772,207 - Psest_0703 0.77 +0.5 772,207 - Psest_0703 0.77 -1.5 772,207 - Psest_0703 0.77 +0.9 772,207 - Psest_0703 0.77 -0.0 772,207 - Psest_0703 0.77 -0.7 772,207 - Psest_0703 0.77 +0.8 772,207 - Psest_0703 0.77 +1.1 772,207 - Psest_0703 0.77 +1.2 772,209 - Psest_0703 0.78 +1.1 772,209 - Psest_0703 0.78 +1.2 772,284 + Psest_0703 0.82 +0.4 772,284 + Psest_0703 0.82 -1.7 772,456 - -1.6 772,706 + +0.8 772,706 + -0.5 772,707 - +0.8 772,707 - +0.2 772,708 + -1.0 772,708 + +0.5 772,708 + -0.1 772,708 + -0.1 772,708 + -1.2 772,709 - -0.4 772,902 + Psest_0704 0.11 +0.1 772,902 + Psest_0704 0.11 +0.7 772,902 + Psest_0704 0.11 -0.5 772,952 + Psest_0704 0.16 +1.3 773,370 + Psest_0704 0.55 -1.8 773,370 + Psest_0704 0.55 -1.4 773,370 + Psest_0704 0.55 -1.3 773,370 + Psest_0704 0.55 -0.9 773,370 + Psest_0704 0.55 -0.5 773,370 + Psest_0704 0.55 -0.2 773,370 + Psest_0704 0.55 +0.1 773,370 + Psest_0704 0.55 -1.9 773,370 + Psest_0704 0.55 -1.1 773,370 + Psest_0704 0.55 -0.6 773,371 - Psest_0704 0.55 +0.4 773,371 - Psest_0704 0.55 -0.9 773,371 - Psest_0704 0.55 -1.6 773,371 - Psest_0704 0.55 -0.3 773,784 + -2.8 773,784 + -0.5 773,784 + +1.1 773,784 + -1.2 773,785 - +0.0 773,785 - +1.2 774,132 + Psest_0705 0.18 +0.4 774,132 + Psest_0705 0.18 +0.1 774,132 + Psest_0705 0.18 -0.4 774,133 - Psest_0705 0.18 +1.0 774,133 - Psest_0705 0.18 -3.1 774,134 + Psest_0705 0.18 -0.5 774,135 - Psest_0705 0.18 -1.5 774,135 - Psest_0705 0.18 +0.7 774,186 - Psest_0705 0.22 +0.9 774,186 - Psest_0705 0.22 +0.7 774,344 + Psest_0705 0.33 +1.8 774,344 + Psest_0705 0.33 +0.9 774,344 + Psest_0705 0.33 +1.2 774,741 + Psest_0705 0.61 -1.0 774,742 - Psest_0705 0.62 +0.9 774,743 + Psest_0705 0.62 +0.3 774,743 + Psest_0705 0.62 +0.2 774,743 + Psest_0705 0.62 +1.1 774,743 + Psest_0705 0.62 -0.7 774,743 + Psest_0705 0.62 +0.5 774,743 + Psest_0705 0.62 -0.2 774,743 + Psest_0705 0.62 -0.9 774,743 + Psest_0705 0.62 +0.5 774,743 + Psest_0705 0.62 +0.1 774,743 + Psest_0705 0.62 -0.9 774,743 + Psest_0705 0.62 -1.7 774,744 - Psest_0705 0.62 +1.3 774,744 - Psest_0705 0.62 -1.4 774,744 - Psest_0705 0.62 -2.3 774,744 - Psest_0705 0.62 -1.5 774,744 - Psest_0705 0.62 +0.0 774,744 - Psest_0705 0.62 +2.4 774,744 - Psest_0705 0.62 -1.1 774,744 - Psest_0705 0.62 -2.2
Or see this region's nucleotide sequence