Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0676

Experiment: Nickel (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0674 and Psest_0675 are separated by 1 nucleotidesPsest_0675 and Psest_0676 are separated by 100 nucleotidesPsest_0676 and Psest_0677 are separated by 21 nucleotides Psest_0674: Psest_0674 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 736,306 to 736,935 _0674 Psest_0675: Psest_0675 - Predicted periplasmic lipoprotein, at 736,937 to 737,227 _0675 Psest_0676: Psest_0676 - ATP-dependent metalloprotease FtsH, at 737,328 to 739,175 _0676 Psest_0677: Psest_0677 - iron-sulfur cluster binding protein, putative, at 739,197 to 740,270 _0677 Position (kb) 737 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 736.917 kb on + strandat 737.039 kb on + strand, within Psest_0675at 737.039 kb on + strand, within Psest_0675at 737.039 kb on + strand, within Psest_0675at 737.039 kb on + strand, within Psest_0675at 737.040 kb on - strand, within Psest_0675at 737.040 kb on - strand, within Psest_0675at 737.121 kb on - strand, within Psest_0675at 737.121 kb on - strand, within Psest_0675at 737.225 kb on + strandat 737.226 kb on - strandat 737.226 kb on - strandat 737.226 kb on - strandat 737.226 kb on - strandat 737.276 kb on + strandat 737.276 kb on + strandat 737.358 kb on + strandat 737.398 kb on - strandat 737.398 kb on - strandat 737.398 kb on - strandat 737.437 kb on - strandat 737.437 kb on - strandat 737.502 kb on - strandat 737.502 kb on - strandat 737.502 kb on - strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.503 kb on + strandat 737.504 kb on - strandat 737.504 kb on - strandat 737.504 kb on - strandat 737.607 kb on + strand, within Psest_0676at 737.766 kb on + strand, within Psest_0676at 737.872 kb on - strand, within Psest_0676at 737.872 kb on - strand, within Psest_0676at 738.629 kb on - strand, within Psest_0676at 738.786 kb on + strand, within Psest_0676at 738.786 kb on + strand, within Psest_0676at 738.786 kb on + strand, within Psest_0676at 738.786 kb on + strand, within Psest_0676at 738.786 kb on + strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.787 kb on - strand, within Psest_0676at 738.788 kb on + strand, within Psest_0676at 738.788 kb on + strand, within Psest_0676at 738.788 kb on + strand, within Psest_0676at 738.789 kb on - strand, within Psest_0676at 738.789 kb on - strand, within Psest_0676at 738.789 kb on - strand, within Psest_0676at 738.789 kb on - strand, within Psest_0676at 738.960 kb on + strand, within Psest_0676at 738.960 kb on + strand, within Psest_0676at 738.961 kb on - strand, within Psest_0676at 739.040 kb on - strandat 739.537 kb on - strand, within Psest_0677at 739.600 kb on + strand, within Psest_0677at 739.969 kb on + strand, within Psest_0677at 739.969 kb on + strand, within Psest_0677at 739.969 kb on + strand, within Psest_0677at 739.969 kb on + strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 739.970 kb on - strand, within Psest_0677at 740.023 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.107 kb on + strand, within Psest_0677at 740.108 kb on - strand, within Psest_0677at 740.108 kb on - strand, within Psest_0677at 740.108 kb on - strand, within Psest_0677

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.75 mM
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736,917 + +1.2
737,039 + Psest_0675 0.35 +1.4
737,039 + Psest_0675 0.35 -0.8
737,039 + Psest_0675 0.35 +0.5
737,039 + Psest_0675 0.35 -1.6
737,040 - Psest_0675 0.35 -0.6
737,040 - Psest_0675 0.35 +0.8
737,121 - Psest_0675 0.63 +1.2
737,121 - Psest_0675 0.63 -1.5
737,225 + +0.2
737,226 - +0.0
737,226 - +0.4
737,226 - +0.9
737,226 - -0.5
737,276 + -1.9
737,276 + -1.4
737,358 + -0.5
737,398 - +1.3
737,398 - -0.6
737,398 - -1.1
737,437 - +1.7
737,437 - +0.4
737,502 - +0.3
737,502 - +0.4
737,502 - +0.2
737,503 + -0.6
737,503 + +0.7
737,503 + -0.3
737,503 + +1.9
737,503 + +1.0
737,503 + -2.7
737,503 + -1.2
737,503 + +0.4
737,503 + +1.8
737,503 + -1.8
737,504 - -0.7
737,504 - -0.7
737,504 - -1.2
737,607 + Psest_0676 0.15 -0.3
737,766 + Psest_0676 0.24 +1.0
737,872 - Psest_0676 0.29 -1.3
737,872 - Psest_0676 0.29 -0.0
738,629 - Psest_0676 0.70 +0.0
738,786 + Psest_0676 0.79 +0.0
738,786 + Psest_0676 0.79 -0.6
738,786 + Psest_0676 0.79 +1.0
738,786 + Psest_0676 0.79 +0.1
738,786 + Psest_0676 0.79 +0.6
738,787 - Psest_0676 0.79 -0.6
738,787 - Psest_0676 0.79 +0.8
738,787 - Psest_0676 0.79 -0.1
738,787 - Psest_0676 0.79 -0.5
738,787 - Psest_0676 0.79 +0.2
738,787 - Psest_0676 0.79 -0.1
738,787 - Psest_0676 0.79 -2.3
738,788 + Psest_0676 0.79 -0.8
738,788 + Psest_0676 0.79 -0.4
738,788 + Psest_0676 0.79 -0.5
738,789 - Psest_0676 0.79 -0.3
738,789 - Psest_0676 0.79 -1.1
738,789 - Psest_0676 0.79 -1.5
738,789 - Psest_0676 0.79 -1.3
738,960 + Psest_0676 0.88 -1.3
738,960 + Psest_0676 0.88 +1.3
738,961 - Psest_0676 0.88 -1.9
739,040 - +0.0
739,537 - Psest_0677 0.32 +2.6
739,600 + Psest_0677 0.38 +0.3
739,969 + Psest_0677 0.72 -0.2
739,969 + Psest_0677 0.72 -0.2
739,969 + Psest_0677 0.72 -1.0
739,969 + Psest_0677 0.72 +1.2
739,970 - Psest_0677 0.72 -1.2
739,970 - Psest_0677 0.72 +0.5
739,970 - Psest_0677 0.72 -0.2
739,970 - Psest_0677 0.72 +0.6
739,970 - Psest_0677 0.72 -0.9
739,970 - Psest_0677 0.72 -2.5
739,970 - Psest_0677 0.72 +0.4
740,023 + Psest_0677 0.77 -2.0
740,107 + Psest_0677 0.85 -2.0
740,107 + Psest_0677 0.85 -0.2
740,107 + Psest_0677 0.85 +1.3
740,107 + Psest_0677 0.85 +0.3
740,107 + Psest_0677 0.85 +1.4
740,107 + Psest_0677 0.85 +0.0
740,107 + Psest_0677 0.85 -2.8
740,108 - Psest_0677 0.85 +0.4
740,108 - Psest_0677 0.85 -1.3
740,108 - Psest_0677 0.85 -1.6

Or see this region's nucleotide sequence