Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4255

Experiment: Nickel (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4254 and Psest_4255 are separated by 144 nucleotidesPsest_4255 and Psest_4256 overlap by 4 nucleotidesPsest_4256 and Psest_4257 are separated by 2 nucleotides Psest_4254: Psest_4254 - Catalase, at 4,441,647 to 4,442,783 _4254 Psest_4255: Psest_4255 - conserved hypothetical integral membrane protein, at 4,442,928 to 4,444,076 _4255 Psest_4256: Psest_4256 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 4,444,073 to 4,444,858 _4256 Psest_4257: Psest_4257 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 4,444,861 to 4,445,799 _4257 Position (kb) 4442 4443 4444 4445Strain fitness (log2 ratio) -2 -1 0 1 2at 4442.328 kb on + strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.347 kb on - strand, within Psest_4254at 4442.373 kb on + strand, within Psest_4254at 4442.409 kb on + strand, within Psest_4254at 4442.409 kb on + strand, within Psest_4254at 4442.410 kb on - strand, within Psest_4254at 4442.410 kb on - strand, within Psest_4254at 4442.411 kb on - strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.737 kb on - strandat 4442.878 kb on + strandat 4442.879 kb on - strandat 4442.908 kb on + strandat 4442.908 kb on + strandat 4442.908 kb on + strandat 4442.908 kb on + strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4443.049 kb on + strandat 4443.049 kb on + strand, within Psest_4255at 4443.049 kb on + strand, within Psest_4255at 4443.050 kb on - strand, within Psest_4255at 4443.050 kb on - strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.716 kb on - strand, within Psest_4255at 4443.721 kb on + strand, within Psest_4255at 4443.722 kb on - strand, within Psest_4255at 4444.102 kb on - strandat 4444.102 kb on - strandat 4444.506 kb on + strand, within Psest_4256at 4444.507 kb on - strand, within Psest_4256at 4444.507 kb on - strand, within Psest_4256at 4444.691 kb on - strand, within Psest_4256at 4444.698 kb on - strand, within Psest_4256at 4444.698 kb on - strand, within Psest_4256at 4444.799 kb on + strandat 4444.799 kb on + strandat 4444.799 kb on + strandat 4444.800 kb on - strandat 4444.800 kb on - strandat 4444.800 kb on - strandat 4444.905 kb on - strandat 4444.969 kb on + strand, within Psest_4257at 4444.969 kb on + strand, within Psest_4257at 4444.975 kb on + strand, within Psest_4257at 4444.975 kb on + strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.976 kb on - strand, within Psest_4257at 4444.979 kb on - strand, within Psest_4257at 4444.979 kb on - strand, within Psest_4257at 4445.035 kb on + strand, within Psest_4257at 4445.035 kb on + strand, within Psest_4257at 4445.035 kb on + strand, within Psest_4257at 4445.036 kb on - strand, within Psest_4257

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.75 mM
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4,442,328 + Psest_4254 0.60 +0.4
4,442,329 - Psest_4254 0.60 +0.2
4,442,329 - Psest_4254 0.60 +1.9
4,442,329 - Psest_4254 0.60 +0.9
4,442,329 - Psest_4254 0.60 -2.1
4,442,329 - Psest_4254 0.60 +1.8
4,442,329 - Psest_4254 0.60 -1.8
4,442,329 - Psest_4254 0.60 -2.6
4,442,329 - Psest_4254 0.60 -1.2
4,442,329 - Psest_4254 0.60 +1.6
4,442,347 - Psest_4254 0.62 -0.9
4,442,373 + Psest_4254 0.64 -0.6
4,442,409 + Psest_4254 0.67 -0.7
4,442,409 + Psest_4254 0.67 -1.7
4,442,410 - Psest_4254 0.67 -0.2
4,442,410 - Psest_4254 0.67 +0.0
4,442,411 - Psest_4254 0.67 +1.1
4,442,535 + Psest_4254 0.78 +1.0
4,442,535 + Psest_4254 0.78 -0.1
4,442,535 + Psest_4254 0.78 +0.1
4,442,535 + Psest_4254 0.78 -0.9
4,442,536 - Psest_4254 0.78 +0.9
4,442,536 - Psest_4254 0.78 -0.6
4,442,536 - Psest_4254 0.78 +0.3
4,442,536 - Psest_4254 0.78 +0.3
4,442,536 - Psest_4254 0.78 +1.7
4,442,536 - Psest_4254 0.78 -0.5
4,442,536 - Psest_4254 0.78 +1.1
4,442,536 - Psest_4254 0.78 -1.1
4,442,536 - Psest_4254 0.78 -1.0
4,442,536 - Psest_4254 0.78 -0.2
4,442,536 - Psest_4254 0.78 +0.2
4,442,536 - Psest_4254 0.78 -0.1
4,442,737 - +0.1
4,442,878 + -1.2
4,442,879 - -0.2
4,442,908 + +0.9
4,442,908 + -0.0
4,442,908 + -0.5
4,442,908 + -0.4
4,442,909 - +1.1
4,442,909 - -0.4
4,442,909 - +0.3
4,442,909 - +0.1
4,442,909 - -1.1
4,442,909 - +1.8
4,442,909 - +0.1
4,442,909 - -0.7
4,442,909 - +0.6
4,442,909 - +1.1
4,443,049 + -0.8
4,443,049 + Psest_4255 0.11 -1.0
4,443,049 + Psest_4255 0.11 +0.4
4,443,050 - Psest_4255 0.11 -0.5
4,443,050 - Psest_4255 0.11 -0.7
4,443,546 + Psest_4255 0.54 -0.2
4,443,546 + Psest_4255 0.54 -0.8
4,443,546 + Psest_4255 0.54 -0.5
4,443,546 + Psest_4255 0.54 -0.1
4,443,546 + Psest_4255 0.54 -1.0
4,443,546 + Psest_4255 0.54 -1.0
4,443,546 + Psest_4255 0.54 -2.5
4,443,546 + Psest_4255 0.54 +0.8
4,443,715 + Psest_4255 0.68 -0.3
4,443,715 + Psest_4255 0.68 +1.7
4,443,715 + Psest_4255 0.68 -0.9
4,443,715 + Psest_4255 0.68 -2.1
4,443,716 - Psest_4255 0.69 -1.8
4,443,721 + Psest_4255 0.69 -0.4
4,443,722 - Psest_4255 0.69 +0.3
4,444,102 - -0.9
4,444,102 - -1.5
4,444,506 + Psest_4256 0.55 -1.4
4,444,507 - Psest_4256 0.55 -0.5
4,444,507 - Psest_4256 0.55 -1.7
4,444,691 - Psest_4256 0.79 -0.5
4,444,698 - Psest_4256 0.80 +1.0
4,444,698 - Psest_4256 0.80 -0.7
4,444,799 + -0.7
4,444,799 + -1.9
4,444,799 + -2.0
4,444,800 - -0.2
4,444,800 - -0.1
4,444,800 - -0.1
4,444,905 - +0.1
4,444,969 + Psest_4257 0.12 -1.1
4,444,969 + Psest_4257 0.12 -0.3
4,444,975 + Psest_4257 0.12 -1.6
4,444,975 + Psest_4257 0.12 +1.0
4,444,976 - Psest_4257 0.12 -0.9
4,444,976 - Psest_4257 0.12 +0.1
4,444,976 - Psest_4257 0.12 -1.0
4,444,976 - Psest_4257 0.12 +2.4
4,444,976 - Psest_4257 0.12 +0.9
4,444,976 - Psest_4257 0.12 -0.3
4,444,976 - Psest_4257 0.12 -2.1
4,444,979 - Psest_4257 0.13 -1.0
4,444,979 - Psest_4257 0.13 -0.1
4,445,035 + Psest_4257 0.19 +1.3
4,445,035 + Psest_4257 0.19 +1.0
4,445,035 + Psest_4257 0.19 -0.4
4,445,036 - Psest_4257 0.19 -2.6

Or see this region's nucleotide sequence