Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3897

Experiment: Nickel (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3896 and Psest_3897 overlap by 6 nucleotidesPsest_3897 and Psest_3898 are separated by 114 nucleotidesPsest_3898 and Psest_3899 overlap by 4 nucleotides Psest_3896: Psest_3896 - arsenite-activated ATPase ArsA, at 4,064,768 to 4,065,793 _3896 Psest_3897: Psest_3897 - Protein of unknown function (DUF2628)., at 4,065,788 to 4,066,216 _3897 Psest_3898: Psest_3898 - Dienelactone hydrolase and related enzymes, at 4,066,331 to 4,066,984 _3898 Psest_3899: Psest_3899 - Predicted phosphoribosyltransferases, at 4,066,981 to 4,067,649 _3899 Position (kb) 4065 4066 4067Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4065.176 kb on + strand, within Psest_3896at 4065.373 kb on + strand, within Psest_3896at 4065.374 kb on - strand, within Psest_3896at 4065.374 kb on - strand, within Psest_3896at 4065.374 kb on - strand, within Psest_3896at 4065.825 kb on + strandat 4065.870 kb on + strand, within Psest_3897at 4065.870 kb on + strand, within Psest_3897at 4065.870 kb on + strand, within Psest_3897at 4065.870 kb on + strand, within Psest_3897at 4065.871 kb on - strand, within Psest_3897at 4065.955 kb on + strand, within Psest_3897at 4065.955 kb on + strand, within Psest_3897at 4065.955 kb on + strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.956 kb on - strand, within Psest_3897at 4065.957 kb on + strand, within Psest_3897at 4065.957 kb on + strand, within Psest_3897at 4065.957 kb on + strand, within Psest_3897at 4065.958 kb on - strand, within Psest_3897at 4065.958 kb on - strand, within Psest_3897at 4065.958 kb on - strand, within Psest_3897at 4065.958 kb on - strand, within Psest_3897at 4065.993 kb on + strand, within Psest_3897at 4065.993 kb on + strand, within Psest_3897at 4065.993 kb on + strand, within Psest_3897at 4065.994 kb on - strand, within Psest_3897at 4065.994 kb on - strand, within Psest_3897at 4065.994 kb on - strand, within Psest_3897at 4065.996 kb on + strand, within Psest_3897at 4065.996 kb on + strand, within Psest_3897at 4065.996 kb on + strand, within Psest_3897at 4065.997 kb on - strand, within Psest_3897at 4065.997 kb on - strand, within Psest_3897at 4067.064 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.75 mM
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4,065,176 + Psest_3896 0.40 -1.4
4,065,373 + Psest_3896 0.59 +1.6
4,065,374 - Psest_3896 0.59 +1.0
4,065,374 - Psest_3896 0.59 +1.4
4,065,374 - Psest_3896 0.59 -1.1
4,065,825 + +0.4
4,065,870 + Psest_3897 0.19 +1.3
4,065,870 + Psest_3897 0.19 +1.0
4,065,870 + Psest_3897 0.19 +0.5
4,065,870 + Psest_3897 0.19 -1.7
4,065,871 - Psest_3897 0.19 +0.1
4,065,955 + Psest_3897 0.39 +0.5
4,065,955 + Psest_3897 0.39 +0.8
4,065,955 + Psest_3897 0.39 -1.2
4,065,956 - Psest_3897 0.39 +0.1
4,065,956 - Psest_3897 0.39 -0.9
4,065,956 - Psest_3897 0.39 -0.2
4,065,956 - Psest_3897 0.39 +2.4
4,065,956 - Psest_3897 0.39 +1.5
4,065,956 - Psest_3897 0.39 +0.6
4,065,956 - Psest_3897 0.39 +0.0
4,065,956 - Psest_3897 0.39 +0.6
4,065,956 - Psest_3897 0.39 +1.1
4,065,956 - Psest_3897 0.39 -0.5
4,065,957 + Psest_3897 0.39 +0.5
4,065,957 + Psest_3897 0.39 -1.9
4,065,957 + Psest_3897 0.39 -1.6
4,065,958 - Psest_3897 0.40 -1.6
4,065,958 - Psest_3897 0.40 +0.0
4,065,958 - Psest_3897 0.40 +1.2
4,065,958 - Psest_3897 0.40 -0.3
4,065,993 + Psest_3897 0.48 +1.0
4,065,993 + Psest_3897 0.48 +1.2
4,065,993 + Psest_3897 0.48 +0.4
4,065,994 - Psest_3897 0.48 +0.7
4,065,994 - Psest_3897 0.48 +0.2
4,065,994 - Psest_3897 0.48 +1.7
4,065,996 + Psest_3897 0.48 +2.5
4,065,996 + Psest_3897 0.48 +2.8
4,065,996 + Psest_3897 0.48 -1.7
4,065,997 - Psest_3897 0.49 -0.3
4,065,997 - Psest_3897 0.49 +0.6
4,067,064 - Psest_3899 0.12 +0.3
4,067,082 - Psest_3899 0.15 -0.5
4,067,082 - Psest_3899 0.15 -3.1
4,067,082 - Psest_3899 0.15 +1.1
4,067,082 - Psest_3899 0.15 -1.1

Or see this region's nucleotide sequence