Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2343

Experiment: Nickel (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2342 and Psest_2343 are separated by 171 nucleotidesPsest_2343 and Psest_2344 are separated by 106 nucleotides Psest_2342: Psest_2342 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 2,495,755 to 2,497,170 _2342 Psest_2343: Psest_2343 - Mg-dependent DNase, at 2,497,342 to 2,498,148 _2343 Psest_2344: Psest_2344 - Methyl-accepting chemotaxis protein, at 2,498,255 to 2,499,724 _2344 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -1 0 1at 2496.774 kb on + strand, within Psest_2342at 2497.064 kb on - strandat 2497.064 kb on - strandat 2497.064 kb on - strandat 2497.843 kb on + strand, within Psest_2343at 2497.844 kb on - strand, within Psest_2343at 2497.844 kb on - strand, within Psest_2343at 2497.850 kb on - strand, within Psest_2343at 2497.976 kb on - strand, within Psest_2343at 2498.032 kb on + strand, within Psest_2343at 2498.033 kb on - strand, within Psest_2343at 2498.237 kb on + strandat 2498.239 kb on + strandat 2498.239 kb on + strandat 2498.239 kb on + strandat 2498.239 kb on + strandat 2498.240 kb on - strandat 2498.240 kb on - strandat 2498.240 kb on - strandat 2498.240 kb on - strandat 2498.240 kb on - strandat 2498.288 kb on + strandat 2498.345 kb on + strandat 2498.739 kb on + strand, within Psest_2344at 2498.752 kb on + strand, within Psest_2344at 2498.753 kb on - strand, within Psest_2344at 2498.753 kb on - strand, within Psest_2344at 2498.968 kb on + strand, within Psest_2344

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.75 mM
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2,496,774 + Psest_2342 0.72 +0.5
2,497,064 - +0.1
2,497,064 - +0.2
2,497,064 - +1.6
2,497,843 + Psest_2343 0.62 +1.3
2,497,844 - Psest_2343 0.62 -0.1
2,497,844 - Psest_2343 0.62 +0.9
2,497,850 - Psest_2343 0.63 -1.6
2,497,976 - Psest_2343 0.79 +1.6
2,498,032 + Psest_2343 0.86 +0.8
2,498,033 - Psest_2343 0.86 +0.7
2,498,237 + +0.7
2,498,239 + +0.2
2,498,239 + +0.6
2,498,239 + -0.1
2,498,239 + +0.7
2,498,240 - +0.1
2,498,240 - +0.1
2,498,240 - +0.6
2,498,240 - +1.1
2,498,240 - +0.6
2,498,288 + -0.8
2,498,345 + +0.7
2,498,739 + Psest_2344 0.33 -0.5
2,498,752 + Psest_2344 0.34 +1.2
2,498,753 - Psest_2344 0.34 +0.3
2,498,753 - Psest_2344 0.34 +0.4
2,498,968 + Psest_2344 0.49 +1.2

Or see this region's nucleotide sequence