Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1916

Experiment: Nickel (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1915 and Psest_1916 are separated by 39 nucleotidesPsest_1916 and Psest_1917 are separated by 215 nucleotides Psest_1915: Psest_1915 - chromate transporter, chromate ion transporter (CHR) family, at 2,022,193 to 2,023,413 _1915 Psest_1916: Psest_1916 - Uncharacterized protein conserved in bacteria, at 2,023,453 to 2,024,433 _1916 Psest_1917: Psest_1917 - Predicted sugar kinase, at 2,024,649 to 2,025,536 _1917 Position (kb) 2023 2024 2025Strain fitness (log2 ratio) -2 -1 0 1 2at 2022.659 kb on - strand, within Psest_1915at 2022.661 kb on + strand, within Psest_1915at 2022.661 kb on + strand, within Psest_1915at 2022.661 kb on + strand, within Psest_1915at 2022.662 kb on - strand, within Psest_1915at 2022.698 kb on + strand, within Psest_1915at 2022.817 kb on + strand, within Psest_1915at 2022.830 kb on - strand, within Psest_1915at 2022.830 kb on - strand, within Psest_1915at 2023.096 kb on + strand, within Psest_1915at 2023.096 kb on + strand, within Psest_1915at 2023.125 kb on + strand, within Psest_1915at 2024.173 kb on + strand, within Psest_1916at 2024.174 kb on - strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.187 kb on - strand, within Psest_1916at 2024.187 kb on - strand, within Psest_1916at 2024.356 kb on + strandat 2024.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.75 mM
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2,022,659 - Psest_1915 0.38 -0.1
2,022,661 + Psest_1915 0.38 -0.2
2,022,661 + Psest_1915 0.38 -2.1
2,022,661 + Psest_1915 0.38 +1.1
2,022,662 - Psest_1915 0.38 +0.3
2,022,698 + Psest_1915 0.41 -0.9
2,022,817 + Psest_1915 0.51 -0.6
2,022,830 - Psest_1915 0.52 -1.0
2,022,830 - Psest_1915 0.52 +2.0
2,023,096 + Psest_1915 0.74 -0.2
2,023,096 + Psest_1915 0.74 -0.7
2,023,125 + Psest_1915 0.76 -1.3
2,024,173 + Psest_1916 0.73 -0.6
2,024,174 - Psest_1916 0.73 -0.6
2,024,183 + Psest_1916 0.74 +0.2
2,024,183 + Psest_1916 0.74 +1.9
2,024,183 + Psest_1916 0.74 -0.8
2,024,183 + Psest_1916 0.74 +0.9
2,024,183 + Psest_1916 0.74 -0.7
2,024,183 + Psest_1916 0.74 +2.1
2,024,186 + Psest_1916 0.75 -0.3
2,024,186 + Psest_1916 0.75 +2.1
2,024,186 + Psest_1916 0.75 +0.6
2,024,187 - Psest_1916 0.75 +1.4
2,024,187 - Psest_1916 0.75 +0.4
2,024,356 + -0.3
2,024,357 - +0.9

Or see this region's nucleotide sequence