Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02285 and SMc02326 are separated by 264 nucleotides SMc02326 and SMc02327 are separated by 661 nucleotides
SMc02285: SMc02285 - adenylate cyclase transmembrane protein, at 657,348 to 658,595
SMc02285
SMc02326: SMc02326 - hypothetical protein, at 658,860 to 659,342
SMc02326
SMc02327: SMc02327 - ribonuclease HI protein, at 660,004 to 660,513
SMc02327
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1 at 657.879 kb on + strand, within SMc02285 at 657.879 kb on + strand, within SMc02285 at 658.335 kb on + strand, within SMc02285 at 658.393 kb on + strand, within SMc02285 at 658.652 kb on + strand at 658.652 kb on + strand at 658.653 kb on - strand at 658.653 kb on - strand at 658.734 kb on - strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.953 kb on + strand, within SMc02326 at 659.048 kb on + strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.090 kb on - strand, within SMc02326 at 659.152 kb on + strand, within SMc02326 at 659.180 kb on + strand, within SMc02326 at 659.181 kb on - strand, within SMc02326 at 659.181 kb on - strand, within SMc02326 at 659.187 kb on - strand, within SMc02326 at 659.210 kb on + strand, within SMc02326 at 659.414 kb on + strand at 659.415 kb on - strand at 659.415 kb on - strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.457 kb on - strand at 659.457 kb on - strand at 659.462 kb on + strand at 659.462 kb on + strand at 659.463 kb on - strand at 659.468 kb on + strand at 659.469 kb on - strand at 659.590 kb on + strand at 659.590 kb on + strand at 659.591 kb on - strand at 659.637 kb on - strand at 659.685 kb on + strand at 659.725 kb on + strand at 659.725 kb on + strand at 659.725 kb on + strand at 659.786 kb on + strand at 659.787 kb on - strand at 659.787 kb on - strand at 659.787 kb on - strand at 659.962 kb on + strand at 659.962 kb on + strand at 659.979 kb on + strand at 660.015 kb on + strand at 660.015 kb on + strand at 660.015 kb on + strand at 660.016 kb on - strand at 660.016 kb on - strand at 660.016 kb on - strand at 660.104 kb on - strand, within SMc02327 at 660.104 kb on - strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.331 kb on - strand, within SMc02327
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 657,879 + SMc02285 0.43 -0.6 657,879 + SMc02285 0.43 -0.3 658,335 + SMc02285 0.79 -0.1 658,393 + SMc02285 0.84 +0.8 658,652 + +0.1 658,652 + -0.7 658,653 - -0.2 658,653 - +0.3 658,734 - +0.5 658,887 + -0.7 658,887 + -0.2 658,887 + -0.7 658,887 + +1.5 658,887 + -0.2 658,887 + -1.4 658,953 + SMc02326 0.19 -0.5 659,048 + SMc02326 0.39 -2.4 659,049 - SMc02326 0.39 -2.0 659,049 - SMc02326 0.39 +0.0 659,049 - SMc02326 0.39 -1.1 659,090 - SMc02326 0.48 -0.3 659,152 + SMc02326 0.60 -0.6 659,180 + SMc02326 0.66 +0.3 659,181 - SMc02326 0.66 -0.4 659,181 - SMc02326 0.66 +0.2 659,187 - SMc02326 0.68 -0.1 659,210 + SMc02326 0.72 -0.1 659,414 + +0.9 659,415 - +1.1 659,415 - +0.1 659,456 + -1.3 659,456 + -0.8 659,456 + -0.4 659,456 + -0.1 659,456 + -0.5 659,457 - +0.7 659,457 - +0.7 659,462 + -0.2 659,462 + -1.3 659,463 - -0.0 659,468 + -0.7 659,469 - -0.2 659,590 + +0.3 659,590 + +0.0 659,591 - +0.8 659,637 - +0.0 659,685 + -0.6 659,725 + +1.5 659,725 + +0.2 659,725 + +0.7 659,786 + -0.3 659,787 - -1.0 659,787 - +0.8 659,787 - -0.1 659,962 + -0.0 659,962 + -0.3 659,979 + -0.2 660,015 + +0.2 660,015 + -0.5 660,015 + +0.5 660,016 - +0.1 660,016 - +0.3 660,016 - +0.9 660,104 - SMc02327 0.20 -1.4 660,104 - SMc02327 0.20 +1.5 660,245 + SMc02327 0.47 -1.0 660,245 + SMc02327 0.47 +0.3 660,245 + SMc02327 0.47 +0.7 660,246 - SMc02327 0.47 -0.1 660,246 - SMc02327 0.47 -0.1 660,246 - SMc02327 0.47 -0.2 660,330 + SMc02327 0.64 +0.0 660,330 + SMc02327 0.64 -0.0 660,330 + SMc02327 0.64 -0.2 660,330 + SMc02327 0.64 +0.6 660,330 + SMc02327 0.64 -0.1 660,331 - SMc02327 0.64 +0.4
Or see this region's nucleotide sequence