Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00405 and SMc00406 are separated by 59 nucleotides SMc00406 and SMc00407 are separated by 10 nucleotides SMc00407 and SMc00408 are separated by 156 nucleotides
SMc00405: SMc00405 - hypothetical protein, at 356,354 to 357,229
SMc00405
SMc00406: SMc00406 - 4Fe-4S ferredoxin, at 357,289 to 358,389
SMc00406
SMc00407: SMc00407 - glutathione S-transferase, at 358,400 to 359,092
SMc00407
SMc00408: SMc00408 - UDP pyrophosphate phosphatase, at 359,249 to 360,055
SMc00408
Position (kb) 357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 356.348 kb on - strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.356 kb on - strand at 356.356 kb on - strand at 356.406 kb on + strand at 356.407 kb on - strand at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.754 kb on + strand, within SMc00405 at 356.754 kb on + strand, within SMc00405 at 356.755 kb on - strand, within SMc00405 at 356.755 kb on - strand, within SMc00405 at 356.907 kb on + strand, within SMc00405 at 356.908 kb on - strand, within SMc00405 at 357.400 kb on + strand, within SMc00406 at 357.400 kb on + strand, within SMc00406 at 357.401 kb on - strand, within SMc00406 at 357.475 kb on + strand, within SMc00406 at 357.638 kb on + strand, within SMc00406 at 357.638 kb on + strand, within SMc00406 at 357.704 kb on + strand, within SMc00406 at 357.705 kb on - strand, within SMc00406 at 357.705 kb on - strand, within SMc00406 at 357.735 kb on - strand, within SMc00406 at 357.815 kb on - strand, within SMc00406 at 357.815 kb on - strand, within SMc00406 at 358.055 kb on + strand, within SMc00406 at 358.056 kb on - strand, within SMc00406 at 358.118 kb on + strand, within SMc00406 at 358.118 kb on + strand, within SMc00406 at 358.119 kb on - strand, within SMc00406 at 358.119 kb on - strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.213 kb on - strand, within SMc00406 at 358.213 kb on - strand, within SMc00406 at 358.401 kb on + strand at 358.402 kb on - strand at 359.228 kb on + strand at 359.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 356,348 - -0.3 356,355 + -0.0 356,355 + -1.8 356,355 + +1.3 356,355 + +1.0 356,356 - +0.2 356,356 - -0.6 356,406 + -0.8 356,407 - -2.6 356,500 + SMc00405 0.17 -1.5 356,500 + SMc00405 0.17 -2.1 356,500 + SMc00405 0.17 -0.1 356,500 + SMc00405 0.17 -1.7 356,501 - SMc00405 0.17 -3.0 356,501 - SMc00405 0.17 -1.4 356,501 - SMc00405 0.17 -2.9 356,501 - SMc00405 0.17 -2.8 356,501 - SMc00405 0.17 -1.8 356,754 + SMc00405 0.46 -1.8 356,754 + SMc00405 0.46 -2.5 356,755 - SMc00405 0.46 -1.6 356,755 - SMc00405 0.46 -1.8 356,907 + SMc00405 0.63 -1.6 356,908 - SMc00405 0.63 -2.4 357,400 + SMc00406 0.10 -0.7 357,400 + SMc00406 0.10 -0.5 357,401 - SMc00406 0.10 +0.4 357,475 + SMc00406 0.17 -0.5 357,638 + SMc00406 0.32 -0.8 357,638 + SMc00406 0.32 +0.6 357,704 + SMc00406 0.38 +0.4 357,705 - SMc00406 0.38 -0.8 357,705 - SMc00406 0.38 -0.4 357,735 - SMc00406 0.41 -0.1 357,815 - SMc00406 0.48 +1.8 357,815 - SMc00406 0.48 +0.9 358,055 + SMc00406 0.70 +0.5 358,056 - SMc00406 0.70 -0.2 358,118 + SMc00406 0.75 +0.2 358,118 + SMc00406 0.75 -0.9 358,119 - SMc00406 0.75 -0.4 358,119 - SMc00406 0.75 +0.1 358,212 + SMc00406 0.84 -0.1 358,212 + SMc00406 0.84 +0.2 358,212 + SMc00406 0.84 -0.6 358,212 + SMc00406 0.84 +0.0 358,213 - SMc00406 0.84 -0.6 358,213 - SMc00406 0.84 -0.3 358,401 + +0.4 358,402 - +1.8 359,228 + +0.4 359,228 + -0.4
Or see this region's nucleotide sequence