Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1118 and SMa1120 are separated by 56 nucleotides SMa1120 and SMa1122 are separated by 6 nucleotides SMa1122 and SMa1124 are separated by 3 nucleotides
SMa1118: SMa1118 - HspC2 heat shock protein, at 608,683 to 609,210
SMa1118
SMa1120: SMa1120 - ABC transporter ATP-binding protein, at 609,267 to 610,181
SMa1120
SMa1122: SMa1122 - permease, at 610,188 to 612,551
SMa1122
SMa1124: SMa1124 - hypothetical protein, at 612,555 to 613,754
SMa1124
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.282 kb on - strand at 609.304 kb on + strand at 609.461 kb on - strand, within SMa1120 at 609.615 kb on - strand, within SMa1120 at 609.632 kb on + strand, within SMa1120 at 609.650 kb on + strand, within SMa1120 at 610.108 kb on - strand at 610.253 kb on - strand at 610.305 kb on - strand at 610.335 kb on + strand at 610.335 kb on + strand at 610.920 kb on + strand, within SMa1122 at 610.920 kb on + strand, within SMa1122 at 610.921 kb on - strand, within SMa1122 at 611.127 kb on + strand, within SMa1122 at 611.128 kb on - strand, within SMa1122 at 611.128 kb on - strand, within SMa1122 at 611.144 kb on + strand, within SMa1122 at 611.145 kb on - strand, within SMa1122 at 611.396 kb on + strand, within SMa1122 at 611.396 kb on + strand, within SMa1122 at 611.397 kb on - strand, within SMa1122 at 611.455 kb on + strand, within SMa1122 at 611.539 kb on + strand, within SMa1122 at 611.629 kb on + strand, within SMa1122 at 611.893 kb on + strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 612.210 kb on + strand, within SMa1122 at 612.217 kb on - strand, within SMa1122 at 612.253 kb on + strand, within SMa1122 at 612.254 kb on - strand, within SMa1122 at 612.378 kb on + strand at 612.378 kb on + strand at 612.442 kb on - strand at 612.549 kb on + strand at 612.549 kb on + strand at 612.550 kb on - strand at 612.625 kb on - strand at 612.625 kb on - strand at 612.767 kb on + strand, within SMa1124 at 613.038 kb on + strand, within SMa1124 at 613.082 kb on - strand, within SMa1124
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 609,282 - +1.6 609,304 + +0.2 609,461 - SMa1120 0.21 +0.1 609,615 - SMa1120 0.38 -0.2 609,632 + SMa1120 0.40 -0.0 609,650 + SMa1120 0.42 +0.1 610,108 - +2.6 610,253 - -0.7 610,305 - -0.4 610,335 + +0.4 610,335 + -0.5 610,920 + SMa1122 0.31 -0.3 610,920 + SMa1122 0.31 +0.8 610,921 - SMa1122 0.31 +0.4 611,127 + SMa1122 0.40 -0.3 611,128 - SMa1122 0.40 -0.2 611,128 - SMa1122 0.40 +0.0 611,144 + SMa1122 0.40 +0.4 611,145 - SMa1122 0.40 +2.1 611,396 + SMa1122 0.51 +0.3 611,396 + SMa1122 0.51 +1.2 611,397 - SMa1122 0.51 -0.0 611,455 + SMa1122 0.54 +0.0 611,539 + SMa1122 0.57 +0.4 611,629 + SMa1122 0.61 +0.1 611,893 + SMa1122 0.72 +1.9 611,947 - SMa1122 0.74 -1.1 611,947 - SMa1122 0.74 +0.1 612,210 + SMa1122 0.86 +0.9 612,217 - SMa1122 0.86 -0.0 612,253 + SMa1122 0.87 -0.0 612,254 - SMa1122 0.87 -0.0 612,378 + +0.0 612,378 + +0.7 612,442 - -1.9 612,549 + +0.2 612,549 + -0.2 612,550 - +0.8 612,625 - +0.6 612,625 - +0.2 612,767 + SMa1124 0.18 +0.3 613,038 + SMa1124 0.40 -0.0 613,082 - SMa1124 0.44 -0.6
Or see this region's nucleotide sequence