Strain Fitness in Sinorhizobium meliloti 1021 around SMa0709

Experiment: Xylobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0708 and SMa0709 are separated by 32 nucleotidesSMa0709 and SMa0710 overlap by 26 nucleotidesSMa0710 and SMa0711 are separated by 11 nucleotides SMa0708: SMa0708 - enolase, at 382,918 to 384,087 SMa0708 SMa0709: SMa0709 - ABC transporter substrate-binding protein, at 384,120 to 385,385 SMa0709 SMa0710: SMa0710 - ABC transporter permease, at 385,360 to 386,373 SMa0710 SMa0711: SMa0711 - ABC transporter permease, at 386,385 to 387,215 SMa0711 Position (kb) 384 385 386Strain fitness (log2 ratio) -2 -1 0 1 2at 383.233 kb on + strand, within SMa0708at 383.233 kb on + strand, within SMa0708at 383.258 kb on - strand, within SMa0708at 383.259 kb on + strand, within SMa0708at 383.272 kb on + strand, within SMa0708at 383.273 kb on - strand, within SMa0708at 383.386 kb on + strand, within SMa0708at 383.386 kb on + strand, within SMa0708at 383.387 kb on - strand, within SMa0708at 383.387 kb on - strand, within SMa0708at 383.387 kb on - strand, within SMa0708at 383.388 kb on + strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.740 kb on - strand, within SMa0708at 383.796 kb on + strand, within SMa0708at 383.797 kb on - strand, within SMa0708at 383.830 kb on + strand, within SMa0708at 383.831 kb on - strand, within SMa0708at 383.831 kb on - strand, within SMa0708at 384.013 kb on + strandat 384.303 kb on - strand, within SMa0709at 384.336 kb on + strand, within SMa0709at 384.383 kb on + strand, within SMa0709at 384.425 kb on + strand, within SMa0709at 384.518 kb on + strand, within SMa0709at 384.543 kb on + strand, within SMa0709at 384.544 kb on - strand, within SMa0709at 384.565 kb on - strand, within SMa0709at 384.612 kb on + strand, within SMa0709at 384.720 kb on + strand, within SMa0709at 384.720 kb on + strand, within SMa0709at 384.721 kb on - strand, within SMa0709at 384.721 kb on - strand, within SMa0709at 384.721 kb on - strand, within SMa0709at 384.724 kb on + strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.741 kb on + strand, within SMa0709at 384.793 kb on + strand, within SMa0709at 384.793 kb on + strand, within SMa0709at 384.793 kb on + strand, within SMa0709at 384.794 kb on - strand, within SMa0709at 384.971 kb on + strand, within SMa0709at 385.318 kb on + strandat 385.318 kb on + strandat 385.319 kb on - strandat 385.319 kb on - strandat 385.383 kb on + strandat 385.383 kb on + strandat 385.383 kb on + strandat 385.384 kb on - strandat 385.429 kb on + strandat 385.430 kb on - strandat 385.430 kb on - strandat 385.475 kb on + strand, within SMa0710at 385.475 kb on + strand, within SMa0710at 385.476 kb on - strand, within SMa0710at 385.476 kb on - strand, within SMa0710at 385.476 kb on - strand, within SMa0710at 385.522 kb on + strand, within SMa0710at 385.522 kb on + strand, within SMa0710at 385.670 kb on + strand, within SMa0710at 386.002 kb on + strand, within SMa0710at 386.059 kb on + strand, within SMa0710at 386.059 kb on + strand, within SMa0710at 386.251 kb on + strand, within SMa0710at 386.251 kb on + strand, within SMa0710at 386.306 kb on + strandat 386.352 kb on + strandat 386.352 kb on + strandat 386.368 kb on + strandat 386.368 kb on + strandat 386.368 kb on + strandat 386.368 kb on + strandat 386.368 kb on + strandat 386.369 kb on - strandat 386.369 kb on - strandat 386.372 kb on - strandat 386.372 kb on - strandat 386.372 kb on - strandat 386.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylobiose (C)
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383,233 + SMa0708 0.27 +0.0
383,233 + SMa0708 0.27 +0.8
383,258 - SMa0708 0.29 +1.1
383,259 + SMa0708 0.29 -0.3
383,272 + SMa0708 0.30 -0.1
383,273 - SMa0708 0.30 -1.5
383,386 + SMa0708 0.40 +0.7
383,386 + SMa0708 0.40 +0.4
383,387 - SMa0708 0.40 -0.5
383,387 - SMa0708 0.40 -0.2
383,387 - SMa0708 0.40 -0.3
383,388 + SMa0708 0.40 +1.1
383,389 - SMa0708 0.40 -0.0
383,389 - SMa0708 0.40 -0.2
383,389 - SMa0708 0.40 -0.3
383,389 - SMa0708 0.40 -0.2
383,739 + SMa0708 0.70 +0.0
383,739 + SMa0708 0.70 -0.1
383,739 + SMa0708 0.70 -0.6
383,739 + SMa0708 0.70 +0.9
383,740 - SMa0708 0.70 -0.3
383,796 + SMa0708 0.75 -0.2
383,797 - SMa0708 0.75 +0.4
383,830 + SMa0708 0.78 -0.4
383,831 - SMa0708 0.78 +0.3
383,831 - SMa0708 0.78 -0.2
384,013 + -0.9
384,303 - SMa0709 0.14 -1.7
384,336 + SMa0709 0.17 -0.7
384,383 + SMa0709 0.21 +0.3
384,425 + SMa0709 0.24 +1.8
384,518 + SMa0709 0.31 -0.3
384,543 + SMa0709 0.33 +1.3
384,544 - SMa0709 0.33 -0.3
384,565 - SMa0709 0.35 +0.2
384,612 + SMa0709 0.39 -0.4
384,720 + SMa0709 0.47 -0.9
384,720 + SMa0709 0.47 +0.5
384,721 - SMa0709 0.47 +0.0
384,721 - SMa0709 0.47 -0.2
384,721 - SMa0709 0.47 +1.0
384,724 + SMa0709 0.48 -0.7
384,725 - SMa0709 0.48 +0.6
384,725 - SMa0709 0.48 +0.5
384,725 - SMa0709 0.48 +0.8
384,725 - SMa0709 0.48 -0.5
384,741 + SMa0709 0.49 +1.4
384,793 + SMa0709 0.53 -0.5
384,793 + SMa0709 0.53 +0.6
384,793 + SMa0709 0.53 +0.2
384,794 - SMa0709 0.53 +0.5
384,971 + SMa0709 0.67 +0.1
385,318 + +0.1
385,318 + -0.0
385,319 - +2.3
385,319 - +0.0
385,383 + -0.5
385,383 + +0.9
385,383 + +0.4
385,384 - -2.2
385,429 + +0.1
385,430 - +0.3
385,430 - +0.4
385,475 + SMa0710 0.11 -0.2
385,475 + SMa0710 0.11 -2.1
385,476 - SMa0710 0.11 -1.0
385,476 - SMa0710 0.11 +0.1
385,476 - SMa0710 0.11 +0.7
385,522 + SMa0710 0.16 +2.0
385,522 + SMa0710 0.16 +0.5
385,670 + SMa0710 0.31 +1.0
386,002 + SMa0710 0.63 -1.3
386,059 + SMa0710 0.69 -0.6
386,059 + SMa0710 0.69 -1.3
386,251 + SMa0710 0.88 -0.4
386,251 + SMa0710 0.88 +0.7
386,306 + +0.5
386,352 + +1.0
386,352 + -0.1
386,368 + +0.7
386,368 + -1.2
386,368 + +0.4
386,368 + -0.0
386,368 + +0.5
386,369 - -0.0
386,369 - -0.0
386,372 - -0.7
386,372 - -0.4
386,372 - +1.7
386,372 - -0.0

Or see this region's nucleotide sequence