Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21029 and SM_b21030 are separated by 144 nucleotides SM_b21030 and SM_b21031 are separated by 11 nucleotides SM_b21031 and SM_b21032 are separated by 20 nucleotides SM_b21032 and SM_b21034 are separated by 473 nucleotides
SM_b21029: SM_b21029 - hypothetical protein, at 649,978 to 650,502
_b21029
SM_b21030: SM_b21030 - hypothetical protein, at 650,647 to 651,096
_b21030
SM_b21031: SM_b21031 - hypothetical protein, at 651,108 to 651,719
_b21031
SM_b21032: SM_b21032 - hypothetical protein, at 651,740 to 652,156
_b21032
SM_b21034: SM_b21034 - hypothetical protein, at 652,630 to 652,914
_b21034
Position (kb) 651
652 Strain fitness (log2 ratio) -1
0
1
2 at 650.129 kb on - strand, within SM_b21029 at 650.136 kb on + strand, within SM_b21029 at 650.214 kb on - strand, within SM_b21029 at 650.281 kb on - strand, within SM_b21029 at 650.345 kb on + strand, within SM_b21029 at 650.346 kb on - strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.500 kb on + strand at 650.500 kb on + strand at 650.550 kb on + strand at 650.550 kb on + strand at 650.551 kb on - strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.557 kb on - strand at 650.589 kb on - strand at 650.754 kb on + strand, within SM_b21030 at 651.080 kb on - strand at 651.080 kb on - strand at 651.080 kb on - strand at 651.300 kb on + strand, within SM_b21031 at 651.315 kb on + strand, within SM_b21031 at 651.315 kb on + strand, within SM_b21031 at 651.316 kb on - strand, within SM_b21031 at 651.316 kb on - strand, within SM_b21031 at 651.316 kb on - strand, within SM_b21031 at 651.395 kb on + strand, within SM_b21031 at 651.396 kb on - strand, within SM_b21031 at 651.431 kb on + strand, within SM_b21031 at 651.432 kb on - strand, within SM_b21031 at 651.466 kb on - strand, within SM_b21031 at 651.548 kb on + strand, within SM_b21031 at 652.213 kb on + strand at 652.213 kb on + strand at 652.245 kb on - strand at 652.479 kb on - strand at 652.481 kb on + strand at 652.482 kb on - strand at 652.482 kb on - strand at 652.531 kb on - strand at 652.667 kb on - strand, within SM_b21034
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 650,129 - SM_b21029 0.29 +0.2 650,136 + SM_b21029 0.30 +0.2 650,214 - SM_b21029 0.45 -0.8 650,281 - SM_b21029 0.58 -0.3 650,345 + SM_b21029 0.70 +1.6 650,346 - SM_b21029 0.70 +0.2 650,436 + SM_b21029 0.87 +0.9 650,436 + SM_b21029 0.87 -1.2 650,437 - SM_b21029 0.87 -0.2 650,437 - SM_b21029 0.87 +0.3 650,500 + +0.2 650,500 + +0.2 650,550 + -0.4 650,550 + +0.4 650,551 - +0.5 650,556 + +0.3 650,556 + -0.8 650,556 + +0.2 650,556 + +0.5 650,557 - -1.0 650,589 - -0.3 650,754 + SM_b21030 0.24 +1.3 651,080 - +0.1 651,080 - -0.1 651,080 - -0.7 651,300 + SM_b21031 0.31 -0.6 651,315 + SM_b21031 0.34 -0.2 651,315 + SM_b21031 0.34 -0.4 651,316 - SM_b21031 0.34 -0.2 651,316 - SM_b21031 0.34 +1.9 651,316 - SM_b21031 0.34 +0.3 651,395 + SM_b21031 0.47 -1.2 651,396 - SM_b21031 0.47 +0.9 651,431 + SM_b21031 0.53 +0.7 651,432 - SM_b21031 0.53 +1.1 651,466 - SM_b21031 0.58 +0.7 651,548 + SM_b21031 0.72 +1.0 652,213 + +1.8 652,213 + +0.3 652,245 - -0.6 652,479 - -0.3 652,481 + -1.0 652,482 - +0.3 652,482 - -1.1 652,531 - +1.3 652,667 - SM_b21034 0.13 -0.3
Or see this region's nucleotide sequence