Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20280 and SM_b20281 are separated by 81 nucleotides SM_b20281 and SM_b20282 are separated by 3 nucleotides SM_b20282 and SM_b20283 are separated by 10 nucleotides
SM_b20280: SM_b20280 - hypothetical protein, at 284,069 to 285,535
_b20280
SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687
_b20281
SM_b20282: SM_b20282 - spermidine/putrescine ABC transporter permease, at 286,691 to 287,482
_b20282
SM_b20283: SM_b20283 - spermidine/putrescine ABC transporter permease, at 287,493 to 288,476
_b20283
Position (kb) 285
286
287 Strain fitness (log2 ratio) -1
0
1 at 284.662 kb on - strand, within SM_b20280 at 285.196 kb on - strand, within SM_b20280 at 285.471 kb on + strand at 285.471 kb on + strand at 285.472 kb on - strand at 285.539 kb on - strand at 285.829 kb on - strand, within SM_b20281 at 285.829 kb on - strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.434 kb on + strand, within SM_b20281 at 286.435 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.555 kb on + strand, within SM_b20281 at 286.883 kb on + strand, within SM_b20282 at 287.231 kb on + strand, within SM_b20282 at 287.278 kb on - strand, within SM_b20282 at 287.415 kb on + strand at 287.415 kb on + strand at 287.416 kb on - strand at 287.434 kb on - strand at 287.473 kb on - strand at 287.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 284,662 - SM_b20280 0.40 -0.4 285,196 - SM_b20280 0.77 -0.3 285,471 + -0.4 285,471 + +0.1 285,472 - -0.2 285,539 - -0.3 285,829 - SM_b20281 0.20 -0.5 285,829 - SM_b20281 0.20 -1.7 286,020 + SM_b20281 0.38 -0.3 286,020 + SM_b20281 0.38 +0.2 286,020 + SM_b20281 0.38 -1.0 286,434 + SM_b20281 0.76 +0.6 286,435 - SM_b20281 0.76 -0.1 286,504 - SM_b20281 0.83 -0.3 286,504 - SM_b20281 0.83 -0.4 286,504 - SM_b20281 0.83 -0.4 286,555 + SM_b20281 0.88 -0.9 286,883 + SM_b20282 0.24 +0.1 287,231 + SM_b20282 0.68 +0.4 287,278 - SM_b20282 0.74 +1.7 287,415 + +1.4 287,415 + +0.4 287,416 - -0.0 287,434 - -0.3 287,473 - +0.1 287,494 + +0.2
Or see this region's nucleotide sequence