Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0498 and Psest_0499 are separated by 123 nucleotides Psest_0499 and Psest_0500 are separated by 28 nucleotides Psest_0500 and Psest_0501 are separated by 186 nucleotides
Psest_0498: Psest_0498 - ribosome small subunit-dependent GTPase A, at 552,927 to 553,958
_0498
Psest_0499: Psest_0499 - hypothetical protein, at 554,082 to 554,888
_0499
Psest_0500: Psest_0500 - Oligoribonuclease (3'->5' exoribonuclease), at 554,917 to 555,459
_0500
Psest_0501: Psest_0501 - Predicted nucleoside-diphosphate-sugar epimerases, at 555,646 to 556,287
_0501
Position (kb) 554
555 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.209 kb on - strand, within Psest_0498 at 553.396 kb on + strand, within Psest_0498 at 553.411 kb on + strand, within Psest_0498 at 553.963 kb on + strand at 553.963 kb on + strand at 553.964 kb on - strand at 553.964 kb on - strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.994 kb on - strand at 554.046 kb on + strand at 554.046 kb on + strand at 554.047 kb on - strand at 554.047 kb on - strand at 554.047 kb on - strand at 554.099 kb on + strand at 554.137 kb on + strand at 554.415 kb on + strand, within Psest_0499 at 554.415 kb on + strand, within Psest_0499 at 554.415 kb on + strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.668 kb on - strand, within Psest_0499 at 554.668 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 555.290 kb on - strand, within Psest_0500 at 555.290 kb on - strand, within Psest_0500 at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.561 kb on - strand at 555.561 kb on - strand at 555.561 kb on - strand at 555.758 kb on + strand, within Psest_0501 at 555.758 kb on + strand, within Psest_0501 at 555.759 kb on - strand, within Psest_0501
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 553,209 - Psest_0498 0.27 -1.1 553,396 + Psest_0498 0.45 +0.5 553,411 + Psest_0498 0.47 +0.0 553,963 + -2.7 553,963 + +0.4 553,964 - -0.5 553,964 - +2.3 553,993 + +0.4 553,993 + -0.0 553,993 + +0.2 553,993 + +0.7 553,993 + +0.7 553,994 - -0.1 554,046 + +1.3 554,046 + +0.4 554,047 - -0.4 554,047 - -0.3 554,047 - -0.8 554,099 + +2.1 554,137 + -1.5 554,415 + Psest_0499 0.41 -0.2 554,415 + Psest_0499 0.41 -0.2 554,415 + Psest_0499 0.41 +0.3 554,416 - Psest_0499 0.41 -1.3 554,416 - Psest_0499 0.41 -1.0 554,416 - Psest_0499 0.41 -1.1 554,668 - Psest_0499 0.73 -1.8 554,668 - Psest_0499 0.73 +0.6 554,680 - Psest_0499 0.74 -1.5 554,680 - Psest_0499 0.74 +0.4 554,680 - Psest_0499 0.74 -0.8 555,290 - Psest_0500 0.69 -1.4 555,290 - Psest_0500 0.69 +1.1 555,541 + +0.1 555,541 + +1.2 555,541 + +0.7 555,541 + -0.5 555,541 + +1.8 555,541 + -0.0 555,541 + -0.5 555,541 + -0.9 555,541 + +1.1 555,542 - -0.1 555,542 - +1.7 555,542 - +0.6 555,542 - -0.2 555,542 - -0.5 555,542 - -0.5 555,542 - -0.1 555,560 + -0.8 555,560 + -1.4 555,560 + +0.0 555,560 + -0.1 555,561 - -1.1 555,561 - -2.1 555,561 - +0.7 555,758 + Psest_0501 0.17 -0.4 555,758 + Psest_0501 0.17 -1.6 555,759 - Psest_0501 0.18 +0.9
Or see this region's nucleotide sequence