Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0434 and Psest_0435 are separated by 77 nucleotides Psest_0435 and Psest_0436 are separated by 259 nucleotides Psest_0436 and Psest_0437 are separated by 77 nucleotides Psest_0437 and Psest_0438 are separated by 235 nucleotides
Psest_0434: Psest_0434 - hypothetical protein, at 471,134 to 471,760
_0434
Psest_0435: Psest_0435 - Predicted transcriptional regulators, at 471,838 to 472,134
_0435
Psest_0436: Psest_0436 - hypothetical protein, at 472,394 to 472,648
_0436
Psest_0437: Psest_0437 - hypothetical protein, at 472,726 to 472,956
_0437
Psest_0438: Psest_0438 - NACHT domain., at 473,192 to 477,613
_0438
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 471.799 kb on + strand at 471.800 kb on - strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.840 kb on - strand at 471.840 kb on - strand at 471.840 kb on - strand at 471.868 kb on + strand, within Psest_0435 at 471.869 kb on - strand, within Psest_0435 at 471.889 kb on + strand, within Psest_0435 at 471.890 kb on - strand, within Psest_0435 at 471.895 kb on + strand, within Psest_0435 at 471.896 kb on - strand, within Psest_0435 at 471.896 kb on - strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.012 kb on - strand, within Psest_0435 at 472.037 kb on + strand, within Psest_0435 at 472.037 kb on + strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.075 kb on - strand, within Psest_0435 at 472.111 kb on - strand at 472.316 kb on - strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.347 kb on - strand at 472.347 kb on - strand at 472.395 kb on + strand at 472.413 kb on + strand at 472.414 kb on - strand at 472.431 kb on + strand, within Psest_0436 at 472.431 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.438 kb on - strand, within Psest_0436 at 472.438 kb on - strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.577 kb on + strand, within Psest_0436 at 472.602 kb on - strand, within Psest_0436 at 472.705 kb on + strand at 472.705 kb on + strand at 472.705 kb on + strand at 472.705 kb on + strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.760 kb on + strand, within Psest_0437 at 472.760 kb on + strand, within Psest_0437 at 472.761 kb on - strand, within Psest_0437 at 472.761 kb on - strand, within Psest_0437 at 472.872 kb on + strand, within Psest_0437 at 472.932 kb on - strand, within Psest_0437 at 472.932 kb on - strand, within Psest_0437 at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.961 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.993 kb on - strand at 473.016 kb on + strand at 473.017 kb on - strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.070 kb on + strand at 473.070 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.112 kb on - strand at 473.112 kb on - strand at 473.112 kb on - strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.234 kb on + strand at 473.234 kb on + strand at 473.234 kb on + strand at 473.235 kb on - strand at 473.235 kb on - strand at 473.240 kb on + strand at 473.240 kb on + strand at 473.240 kb on + strand at 473.298 kb on - strand at 473.298 kb on - strand at 473.298 kb on - strand at 473.541 kb on + strand at 473.799 kb on - strand, within Psest_0438 at 473.799 kb on - strand, within Psest_0438 at 473.799 kb on - strand, within Psest_0438 at 473.799 kb on - strand, within Psest_0438 at 473.802 kb on + strand, within Psest_0438 at 473.802 kb on + strand, within Psest_0438 at 473.802 kb on + strand, within Psest_0438 at 473.802 kb on + strand, within Psest_0438 at 473.803 kb on - strand, within Psest_0438 at 473.803 kb on - strand, within Psest_0438 at 473.803 kb on - strand, within Psest_0438 at 473.803 kb on - strand, within Psest_0438 at 473.803 kb on - strand, within Psest_0438
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 471,799 + -1.3 471,800 - +1.4 471,839 + -2.3 471,839 + -0.3 471,839 + +1.1 471,839 + -0.4 471,840 - +0.0 471,840 - -1.5 471,840 - +1.9 471,868 + Psest_0435 0.10 +2.2 471,869 - Psest_0435 0.10 -0.8 471,889 + Psest_0435 0.17 +0.3 471,890 - Psest_0435 0.18 +0.5 471,895 + Psest_0435 0.19 -0.8 471,896 - Psest_0435 0.20 +0.5 471,896 - Psest_0435 0.20 +1.2 471,932 + Psest_0435 0.32 -1.1 471,932 + Psest_0435 0.32 +1.8 471,932 + Psest_0435 0.32 +0.8 471,932 + Psest_0435 0.32 -0.1 471,932 + Psest_0435 0.32 +0.5 471,932 + Psest_0435 0.32 +0.6 471,932 + Psest_0435 0.32 +0.4 471,933 - Psest_0435 0.32 -1.6 471,933 - Psest_0435 0.32 -1.0 471,933 - Psest_0435 0.32 -0.7 471,933 - Psest_0435 0.32 -0.6 472,002 + Psest_0435 0.55 -0.8 472,002 + Psest_0435 0.55 -1.5 472,002 + Psest_0435 0.55 -1.5 472,002 + Psest_0435 0.55 +0.9 472,012 - Psest_0435 0.59 +0.5 472,037 + Psest_0435 0.67 -1.2 472,037 + Psest_0435 0.67 -1.6 472,038 - Psest_0435 0.67 -0.5 472,038 - Psest_0435 0.67 +0.1 472,038 - Psest_0435 0.67 +1.1 472,038 - Psest_0435 0.67 -2.3 472,038 - Psest_0435 0.67 +1.6 472,038 - Psest_0435 0.67 -0.1 472,075 - Psest_0435 0.80 +0.3 472,111 - -0.4 472,316 - -1.0 472,346 + +1.7 472,346 + +1.0 472,346 + -0.0 472,346 + -0.7 472,346 + -0.2 472,346 + -1.6 472,346 + -0.9 472,346 + -0.8 472,346 + +1.2 472,346 + -1.7 472,346 + -1.0 472,346 + -0.7 472,347 - -2.3 472,347 - -1.6 472,395 + -2.1 472,413 + +1.6 472,414 - -1.2 472,431 + Psest_0436 0.15 +0.6 472,431 + Psest_0436 0.15 +0.9 472,437 + Psest_0436 0.17 -0.8 472,437 + Psest_0436 0.17 -1.5 472,437 + Psest_0436 0.17 +0.5 472,437 + Psest_0436 0.17 +2.8 472,437 + Psest_0436 0.17 -0.3 472,437 + Psest_0436 0.17 +0.2 472,438 - Psest_0436 0.17 -1.9 472,438 - Psest_0436 0.17 +1.0 472,573 + Psest_0436 0.70 -0.2 472,573 + Psest_0436 0.70 -0.8 472,573 + Psest_0436 0.70 -0.0 472,573 + Psest_0436 0.70 +0.8 472,573 + Psest_0436 0.70 -1.0 472,573 + Psest_0436 0.70 +1.1 472,573 + Psest_0436 0.70 -0.3 472,573 + Psest_0436 0.70 +0.3 472,573 + Psest_0436 0.70 +0.3 472,573 + Psest_0436 0.70 +0.2 472,573 + Psest_0436 0.70 +1.5 472,573 + Psest_0436 0.70 +0.3 472,573 + Psest_0436 0.70 -0.9 472,573 + Psest_0436 0.70 +0.5 472,573 + Psest_0436 0.70 +0.6 472,573 + Psest_0436 0.70 -2.5 472,573 + Psest_0436 0.70 -0.1 472,573 + Psest_0436 0.70 +0.0 472,573 + Psest_0436 0.70 -1.4 472,573 + Psest_0436 0.70 -2.6 472,573 + Psest_0436 0.70 -0.6 472,574 - Psest_0436 0.71 +0.0 472,574 - Psest_0436 0.71 -0.3 472,574 - Psest_0436 0.71 +1.5 472,574 - Psest_0436 0.71 +0.3 472,574 - Psest_0436 0.71 -0.6 472,574 - Psest_0436 0.71 +1.4 472,574 - Psest_0436 0.71 -1.3 472,574 - Psest_0436 0.71 -0.5 472,574 - Psest_0436 0.71 +0.4 472,574 - Psest_0436 0.71 -0.2 472,574 - Psest_0436 0.71 +0.9 472,574 - Psest_0436 0.71 -0.2 472,574 - Psest_0436 0.71 -0.5 472,574 - Psest_0436 0.71 -0.7 472,574 - Psest_0436 0.71 +0.9 472,574 - Psest_0436 0.71 -2.4 472,574 - Psest_0436 0.71 +0.3 472,577 + Psest_0436 0.72 -1.8 472,602 - Psest_0436 0.82 -0.0 472,705 + -0.5 472,705 + -0.1 472,705 + +0.9 472,705 + +0.7 472,706 - -0.8 472,706 - +2.4 472,706 - +0.7 472,706 - +0.8 472,760 + Psest_0437 0.15 +2.2 472,760 + Psest_0437 0.15 +1.0 472,761 - Psest_0437 0.15 +1.7 472,761 - Psest_0437 0.15 +0.4 472,872 + Psest_0437 0.63 -1.4 472,932 - Psest_0437 0.89 +0.5 472,932 - Psest_0437 0.89 +1.1 472,957 + +0.1 472,957 + +0.8 472,957 + -1.5 472,957 + -0.4 472,957 + +0.0 472,957 + -0.3 472,957 + +1.1 472,957 + +0.8 472,957 + +0.2 472,957 + -0.4 472,957 + -1.2 472,958 - +0.5 472,958 - -0.2 472,958 - +1.4 472,958 - -0.4 472,961 + -1.3 472,992 + +0.5 472,992 + -0.8 472,992 + +0.0 472,992 + +0.1 472,993 - -0.5 473,016 + +1.7 473,017 - +0.3 473,029 + -0.0 473,029 + +0.6 473,029 + +0.2 473,029 + +1.0 473,070 + +1.6 473,070 + -0.4 473,111 + -1.8 473,111 + +0.9 473,111 + +1.4 473,111 + -0.8 473,111 + -0.5 473,111 + -0.8 473,111 + +0.2 473,111 + +0.1 473,111 + +0.7 473,112 - +0.3 473,112 - +0.5 473,112 - -0.9 473,113 + -2.0 473,113 + +1.0 473,113 + +0.7 473,113 + -0.7 473,113 + -1.0 473,113 + +0.5 473,113 + +0.5 473,113 + -1.9 473,113 + +0.4 473,113 + -0.1 473,113 + +0.5 473,113 + +1.6 473,113 + +0.3 473,113 + -1.3 473,113 + -0.7 473,113 + -1.6 473,113 + -0.3 473,113 + +0.9 473,114 - +0.1 473,114 - +0.4 473,114 - +1.7 473,114 - +0.4 473,114 - -1.3 473,114 - -1.2 473,114 - +0.8 473,114 - -2.5 473,114 - +0.0 473,114 - +0.9 473,114 - -0.5 473,234 + +0.5 473,234 + -0.6 473,234 + +1.9 473,235 - -1.2 473,235 - +0.8 473,240 + +2.4 473,240 + -2.5 473,240 + +0.1 473,298 - +0.0 473,298 - +0.6 473,298 - -1.8 473,541 + +0.1 473,799 - Psest_0438 0.14 +0.3 473,799 - Psest_0438 0.14 -0.7 473,799 - Psest_0438 0.14 -1.0 473,799 - Psest_0438 0.14 -1.3 473,802 + Psest_0438 0.14 +1.0 473,802 + Psest_0438 0.14 +1.3 473,802 + Psest_0438 0.14 +0.4 473,802 + Psest_0438 0.14 -0.6 473,803 - Psest_0438 0.14 -0.5 473,803 - Psest_0438 0.14 -0.5 473,803 - Psest_0438 0.14 -0.4 473,803 - Psest_0438 0.14 -0.7 473,803 - Psest_0438 0.14 +0.6
Or see this region's nucleotide sequence