Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0409 and Psest_0410 are separated by 71 nucleotides Psest_0410 and Psest_0411 are separated by 93 nucleotides
Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729
_0409
Psest_0410: Psest_0410 - Predicted amidophosphoribosyltransferases, at 445,801 to 446,505
_0410
Psest_0411: Psest_0411 - biotin synthetase, at 446,599 to 447,654
_0411
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 444.903 kb on + strand, within Psest_0409 at 444.903 kb on + strand, within Psest_0409 at 445.219 kb on - strand, within Psest_0409 at 445.615 kb on - strand, within Psest_0409 at 445.711 kb on + strand at 445.747 kb on - strand at 445.760 kb on + strand at 445.777 kb on + strand at 445.778 kb on - strand at 445.778 kb on - strand at 445.835 kb on + strand at 445.835 kb on + strand at 445.836 kb on - strand at 445.836 kb on - strand at 446.266 kb on - strand, within Psest_0410 at 446.318 kb on + strand, within Psest_0410 at 446.319 kb on - strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.582 kb on - strand at 446.582 kb on - strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.792 kb on - strand, within Psest_0411 at 446.813 kb on - strand, within Psest_0411 at 446.813 kb on - strand, within Psest_0411 at 446.813 kb on - strand, within Psest_0411 at 446.950 kb on + strand, within Psest_0411 at 446.951 kb on - strand, within Psest_0411 at 446.951 kb on - strand, within Psest_0411 at 447.062 kb on - strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.081 kb on + strand, within Psest_0411 at 447.094 kb on + strand, within Psest_0411 at 447.094 kb on + strand, within Psest_0411 at 447.095 kb on - strand, within Psest_0411 at 447.095 kb on - strand, within Psest_0411 at 447.095 kb on - strand, within Psest_0411 at 447.097 kb on + strand, within Psest_0411 at 447.124 kb on + strand, within Psest_0411 at 447.124 kb on + strand, within Psest_0411 at 447.124 kb on + strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 444,903 + Psest_0409 0.15 -1.0 444,903 + Psest_0409 0.15 -0.9 445,219 - Psest_0409 0.48 +0.9 445,615 - Psest_0409 0.88 +0.9 445,711 + +0.8 445,747 - -0.2 445,760 + -1.0 445,777 + +1.8 445,778 - +1.2 445,778 - -2.3 445,835 + +0.3 445,835 + +1.2 445,836 - -1.1 445,836 - +0.7 446,266 - Psest_0410 0.66 +0.7 446,318 + Psest_0410 0.73 -0.8 446,319 - Psest_0410 0.73 -0.2 446,430 + Psest_0410 0.89 -0.1 446,430 + Psest_0410 0.89 -1.8 446,431 - Psest_0410 0.89 +1.0 446,431 - Psest_0410 0.89 -0.1 446,431 - Psest_0410 0.89 -2.3 446,431 - Psest_0410 0.89 -0.7 446,431 - Psest_0410 0.89 -1.0 446,581 + +1.3 446,581 + +0.5 446,581 + +3.5 446,581 + +1.3 446,582 - -1.5 446,582 - -1.3 446,585 + +0.3 446,585 + +0.6 446,585 + +0.1 446,585 + -0.9 446,791 + Psest_0411 0.18 -0.2 446,791 + Psest_0411 0.18 -1.0 446,791 + Psest_0411 0.18 +1.0 446,791 + Psest_0411 0.18 -1.5 446,791 + Psest_0411 0.18 -1.8 446,791 + Psest_0411 0.18 +0.6 446,792 - Psest_0411 0.18 -0.5 446,813 - Psest_0411 0.20 -0.0 446,813 - Psest_0411 0.20 +0.5 446,813 - Psest_0411 0.20 -1.6 446,950 + Psest_0411 0.33 +1.3 446,951 - Psest_0411 0.33 -0.9 446,951 - Psest_0411 0.33 -2.3 447,062 - Psest_0411 0.44 -0.8 447,064 + Psest_0411 0.44 -1.6 447,064 + Psest_0411 0.44 +0.2 447,064 + Psest_0411 0.44 -1.3 447,064 + Psest_0411 0.44 +0.3 447,064 + Psest_0411 0.44 +2.0 447,065 - Psest_0411 0.44 -0.7 447,065 - Psest_0411 0.44 +0.3 447,065 - Psest_0411 0.44 +2.7 447,065 - Psest_0411 0.44 -1.2 447,081 + Psest_0411 0.46 +1.7 447,094 + Psest_0411 0.47 -0.5 447,094 + Psest_0411 0.47 -0.3 447,095 - Psest_0411 0.47 +2.1 447,095 - Psest_0411 0.47 -1.0 447,095 - Psest_0411 0.47 -1.6 447,097 + Psest_0411 0.47 -1.3 447,124 + Psest_0411 0.50 -0.5 447,124 + Psest_0411 0.50 -3.3 447,124 + Psest_0411 0.50 -0.9 447,152 - Psest_0411 0.52 -1.2 447,152 - Psest_0411 0.52 +2.1 447,152 - Psest_0411 0.52 -0.9 447,152 - Psest_0411 0.52 -1.5 447,152 - Psest_0411 0.52 -0.2 447,152 - Psest_0411 0.52 -0.8 447,152 - Psest_0411 0.52 +0.3
Or see this region's nucleotide sequence