Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3725 and Psest_3726 are separated by 0 nucleotides Psest_3726 and Psest_3727 are separated by 55 nucleotides Psest_3727 and Psest_3728 are separated by 73 nucleotides
Psest_3725: Psest_3725 - arginyl-tRNA synthetase, at 3,895,449 to 3,897,188
_3725
Psest_3726: Psest_3726 - Cell division protein, at 3,897,189 to 3,897,854
_3726
Psest_3727: Psest_3727 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 3,897,910 to 3,898,881
_3727
Psest_3728: Psest_3728 - UbiD family decarboxylases, at 3,898,955 to 3,900,421
_3728
Position (kb)
3897
3898
3899 Strain fitness (log2 ratio)
-2
-1
0
1 at 3897.911 kb on + strand at 3897.998 kb on + strand at 3897.998 kb on + strand at 3897.998 kb on + strand at 3897.998 kb on + strand at 3898.025 kb on + strand, within Psest_3727 at 3898.025 kb on + strand, within Psest_3727 at 3898.026 kb on - strand, within Psest_3727 at 3898.175 kb on + strand, within Psest_3727 at 3898.175 kb on + strand, within Psest_3727 at 3898.561 kb on + strand, within Psest_3727 at 3898.561 kb on + strand, within Psest_3727 at 3898.562 kb on - strand, within Psest_3727 at 3898.758 kb on + strand, within Psest_3727 at 3898.759 kb on - strand, within Psest_3727 at 3898.872 kb on + strand at 3898.872 kb on + strand at 3898.872 kb on + strand at 3898.873 kb on - strand at 3898.893 kb on - strand at 3898.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,897,911 + -1.6 3,897,998 + +0.4 3,897,998 + +0.1 3,897,998 + -1.8 3,897,998 + +0.3 3,898,025 + Psest_3727 0.12 -2.7 3,898,025 + Psest_3727 0.12 +1.6 3,898,026 - Psest_3727 0.12 -0.2 3,898,175 + Psest_3727 0.27 -1.4 3,898,175 + Psest_3727 0.27 +0.2 3,898,561 + Psest_3727 0.67 -0.9 3,898,561 + Psest_3727 0.67 -1.4 3,898,562 - Psest_3727 0.67 -0.8 3,898,758 + Psest_3727 0.87 -0.2 3,898,759 - Psest_3727 0.87 +1.2 3,898,872 + -0.6 3,898,872 + +1.0 3,898,872 + -0.6 3,898,873 - +0.6 3,898,893 - +1.2 3,898,952 - -1.1
Or see this region's nucleotide sequence