Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0302 and Psest_0303 overlap by 8 nucleotides Psest_0303 and Psest_0304 overlap by 4 nucleotides Psest_0304 and Psest_0305 are separated by 24 nucleotides
Psest_0302: Psest_0302 - Chemotaxis protein histidine kinase and related kinases, at 315,787 to 323,013
_0302
Psest_0303: Psest_0303 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 323,006 to 324,058
_0303
Psest_0304: Psest_0304 - Chemotaxis signal transduction protein, at 324,055 to 324,525
_0304
Psest_0305: Psest_0305 - RNA methyltransferase, RsmE family, at 324,550 to 325,266
_0305
Position (kb) 323
324
325 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.168 kb on + strand, within Psest_0302 at 322.168 kb on + strand, within Psest_0302 at 322.169 kb on - strand, within Psest_0302 at 322.169 kb on - strand, within Psest_0302 at 322.186 kb on + strand, within Psest_0302 at 322.187 kb on - strand, within Psest_0302 at 322.203 kb on + strand, within Psest_0302 at 322.204 kb on - strand, within Psest_0302 at 322.204 kb on - strand, within Psest_0302 at 322.204 kb on - strand, within Psest_0302 at 322.215 kb on + strand, within Psest_0302 at 322.215 kb on + strand, within Psest_0302 at 322.216 kb on - strand, within Psest_0302 at 322.234 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.250 kb on - strand, within Psest_0302 at 322.250 kb on - strand, within Psest_0302 at 322.252 kb on + strand, within Psest_0302 at 322.252 kb on + strand, within Psest_0302 at 322.253 kb on - strand, within Psest_0302 at 322.279 kb on + strand, within Psest_0302 at 322.295 kb on - strand at 322.567 kb on - strand at 322.841 kb on + strand at 322.841 kb on + strand at 322.842 kb on - strand at 322.842 kb on - strand at 322.842 kb on - strand at 322.893 kb on + strand at 322.942 kb on + strand at 322.942 kb on + strand at 322.942 kb on + strand at 322.943 kb on - strand at 322.943 kb on - strand at 322.943 kb on - strand at 322.943 kb on - strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.031 kb on + strand at 323.031 kb on + strand at 323.418 kb on + strand, within Psest_0303 at 323.463 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.960 kb on + strand at 323.960 kb on + strand at 323.960 kb on + strand at 323.960 kb on + strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 324.049 kb on + strand at 324.050 kb on - strand at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 322,168 + Psest_0302 0.88 +1.2 322,168 + Psest_0302 0.88 -1.4 322,169 - Psest_0302 0.88 +0.0 322,169 - Psest_0302 0.88 -0.8 322,186 + Psest_0302 0.89 +1.6 322,187 - Psest_0302 0.89 -0.1 322,203 + Psest_0302 0.89 +1.0 322,204 - Psest_0302 0.89 +0.3 322,204 - Psest_0302 0.89 +1.7 322,204 - Psest_0302 0.89 -0.6 322,215 + Psest_0302 0.89 +1.8 322,215 + Psest_0302 0.89 +0.7 322,216 - Psest_0302 0.89 +2.2 322,234 + Psest_0302 0.89 +0.7 322,249 + Psest_0302 0.89 +0.3 322,249 + Psest_0302 0.89 +0.8 322,249 + Psest_0302 0.89 +0.2 322,249 + Psest_0302 0.89 -0.8 322,249 + Psest_0302 0.89 +1.7 322,249 + Psest_0302 0.89 +1.2 322,250 - Psest_0302 0.89 +1.6 322,250 - Psest_0302 0.89 +1.0 322,252 + Psest_0302 0.89 +0.4 322,252 + Psest_0302 0.89 +0.9 322,253 - Psest_0302 0.89 +0.6 322,279 + Psest_0302 0.90 +0.6 322,295 - -1.0 322,567 - +0.3 322,841 + +0.9 322,841 + +1.3 322,842 - +1.5 322,842 - +1.1 322,842 - +0.2 322,893 + -0.2 322,942 + +1.1 322,942 + -0.0 322,942 + -0.3 322,943 - -0.8 322,943 - -0.8 322,943 - +0.1 322,943 - +0.9 323,029 + +0.8 323,029 + +0.2 323,029 + -0.1 323,029 + -2.1 323,029 + -0.9 323,029 + +0.1 323,029 + -0.0 323,029 + -0.4 323,029 + -1.1 323,029 + +0.7 323,029 + -1.4 323,030 - -0.5 323,030 - +0.2 323,030 - +1.8 323,030 - -1.0 323,030 - +0.9 323,030 - +0.2 323,030 - +0.7 323,030 - -1.8 323,030 - +2.7 323,030 - +0.1 323,030 - -0.3 323,030 - +0.8 323,030 - -2.3 323,031 + +0.9 323,031 + -0.9 323,418 + Psest_0303 0.39 +0.7 323,463 + Psest_0303 0.43 -1.1 323,552 + Psest_0303 0.52 +0.5 323,552 + Psest_0303 0.52 +0.6 323,552 + Psest_0303 0.52 -0.6 323,552 + Psest_0303 0.52 -0.5 323,552 + Psest_0303 0.52 -0.9 323,552 + Psest_0303 0.52 -0.1 323,552 + Psest_0303 0.52 -2.4 323,552 + Psest_0303 0.52 -1.2 323,751 - Psest_0303 0.71 +0.2 323,751 - Psest_0303 0.71 -1.7 323,751 - Psest_0303 0.71 +0.1 323,861 + Psest_0303 0.81 -0.4 323,861 + Psest_0303 0.81 +2.0 323,861 + Psest_0303 0.81 +0.6 323,861 + Psest_0303 0.81 +0.0 323,861 + Psest_0303 0.81 -1.1 323,862 - Psest_0303 0.81 +1.0 323,862 - Psest_0303 0.81 -2.2 323,862 - Psest_0303 0.81 -0.6 323,862 - Psest_0303 0.81 -1.3 323,862 - Psest_0303 0.81 -0.5 323,862 - Psest_0303 0.81 -1.6 323,862 - Psest_0303 0.81 +0.6 323,862 - Psest_0303 0.81 -1.4 323,862 - Psest_0303 0.81 -0.2 323,862 - Psest_0303 0.81 -1.2 323,960 + +1.7 323,960 + +1.6 323,960 + -1.6 323,960 + +0.2 323,961 - -1.1 323,961 - -0.1 323,961 - -0.7 323,961 - -0.5 323,961 - +0.0 324,049 + -1.2 324,050 - -0.9 325,053 + Psest_0305 0.70 -0.4 325,053 + Psest_0305 0.70 -0.2 325,053 + Psest_0305 0.70 +1.0 325,053 + Psest_0305 0.70 -1.8 325,054 - Psest_0305 0.70 +0.5 325,054 - Psest_0305 0.70 +0.6 325,054 - Psest_0305 0.70 -0.3 325,054 - Psest_0305 0.70 -1.6
Or see this region's nucleotide sequence