Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0263

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0262 and Psest_0263 are separated by 185 nucleotidesPsest_0263 and Psest_0264 are separated by 120 nucleotidesPsest_0264 and Psest_0265 are separated by 68 nucleotides Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164 _0262 Psest_0263: Psest_0263 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 279,350 to 281,278 _0263 Psest_0264: Psest_0264 - monofunctional biosynthetic peptidoglycan transglycosylase, at 281,399 to 282,127 _0264 Psest_0265: Psest_0265 - Uncharacterized small membrane protein, at 282,196 to 282,570 _0265 Position (kb) 279 280 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.512 kb on + strand, within Psest_0262at 278.520 kb on + strand, within Psest_0262at 278.521 kb on - strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.567 kb on + strand, within Psest_0262at 278.568 kb on - strand, within Psest_0262at 278.647 kb on + strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.712 kb on - strand, within Psest_0262at 278.713 kb on + strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 279.075 kb on + strandat 279.248 kb on + strandat 279.249 kb on - strandat 279.249 kb on - strandat 279.314 kb on + strandat 279.314 kb on + strandat 279.315 kb on - strandat 279.315 kb on - strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.516 kb on - strandat 279.516 kb on - strandat 279.516 kb on - strandat 279.622 kb on + strand, within Psest_0263at 279.622 kb on + strand, within Psest_0263at 279.622 kb on + strand, within Psest_0263at 279.623 kb on - strand, within Psest_0263at 279.812 kb on - strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 280.074 kb on + strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.086 kb on + strand, within Psest_0263at 280.179 kb on + strand, within Psest_0263at 280.180 kb on - strand, within Psest_0263at 280.188 kb on + strand, within Psest_0263at 280.188 kb on + strand, within Psest_0263at 280.188 kb on + strand, within Psest_0263at 280.188 kb on + strand, within Psest_0263at 280.188 kb on + strand, within Psest_0263at 280.188 kb on + strand, within Psest_0263at 280.189 kb on - strand, within Psest_0263at 280.189 kb on - strand, within Psest_0263at 280.282 kb on - strand, within Psest_0263at 280.660 kb on - strand, within Psest_0263at 280.660 kb on - strand, within Psest_0263at 280.728 kb on + strand, within Psest_0263at 280.729 kb on - strand, within Psest_0263at 280.866 kb on + strand, within Psest_0263at 280.867 kb on - strand, within Psest_0263at 280.867 kb on - strand, within Psest_0263at 280.946 kb on - strand, within Psest_0263at 281.118 kb on - strandat 281.244 kb on + strandat 281.245 kb on - strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.268 kb on + strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.269 kb on - strandat 281.303 kb on - strandat 281.344 kb on - strandat 281.390 kb on + strandat 281.390 kb on + strandat 281.390 kb on + strandat 281.390 kb on + strandat 281.390 kb on + strandat 281.390 kb on + strandat 281.390 kb on + strandat 281.391 kb on - strandat 281.391 kb on - strandat 281.391 kb on - strandat 281.391 kb on - strandat 281.400 kb on + strandat 281.400 kb on + strandat 281.400 kb on + strandat 281.400 kb on + strandat 281.401 kb on - strandat 281.451 kb on + strandat 281.452 kb on - strandat 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.511 kb on + strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.512 kb on - strand, within Psest_0264at 281.556 kb on - strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.974 kb on + strand, within Psest_0264at 282.056 kb on + strandat 282.056 kb on + strandat 282.057 kb on - strandat 282.057 kb on - strandat 282.160 kb on + strandat 282.160 kb on + strandat 282.160 kb on + strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.162 kb on + strandat 282.163 kb on - strandat 282.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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278,374 + Psest_0262 0.69 -1.9
278,374 + Psest_0262 0.69 +0.2
278,374 + Psest_0262 0.69 -0.7
278,374 + Psest_0262 0.69 -2.1
278,374 + Psest_0262 0.69 -0.5
278,374 + Psest_0262 0.69 -3.3
278,374 + Psest_0262 0.69 -2.0
278,374 + Psest_0262 0.69 -0.3
278,374 + Psest_0262 0.69 -1.0
278,375 - Psest_0262 0.69 -1.1
278,375 - Psest_0262 0.69 -0.6
278,375 - Psest_0262 0.69 -0.1
278,375 - Psest_0262 0.69 +0.1
278,375 - Psest_0262 0.69 +0.5
278,375 - Psest_0262 0.69 +0.4
278,375 - Psest_0262 0.69 -1.3
278,375 - Psest_0262 0.69 +1.0
278,375 - Psest_0262 0.69 -0.6
278,375 - Psest_0262 0.69 +1.1
278,375 - Psest_0262 0.69 -1.1
278,375 - Psest_0262 0.69 +0.9
278,375 - Psest_0262 0.69 -1.4
278,375 - Psest_0262 0.69 +1.0
278,375 - Psest_0262 0.69 -0.1
278,378 + Psest_0262 0.69 -2.1
278,378 + Psest_0262 0.69 -0.7
278,378 + Psest_0262 0.69 +0.3
278,378 + Psest_0262 0.69 -1.8
278,378 + Psest_0262 0.69 -1.1
278,378 + Psest_0262 0.69 +0.5
278,378 + Psest_0262 0.69 -0.1
278,378 + Psest_0262 0.69 -1.6
278,378 + Psest_0262 0.69 +0.0
278,378 + Psest_0262 0.69 -2.1
278,378 + Psest_0262 0.69 -0.6
278,378 + Psest_0262 0.69 +0.3
278,379 - Psest_0262 0.69 +2.2
278,379 - Psest_0262 0.69 -1.2
278,379 - Psest_0262 0.69 +0.2
278,379 - Psest_0262 0.69 -1.1
278,379 - Psest_0262 0.69 +1.8
278,379 - Psest_0262 0.69 -1.7
278,379 - Psest_0262 0.69 -1.6
278,379 - Psest_0262 0.69 -1.3
278,379 - Psest_0262 0.69 -2.0
278,379 - Psest_0262 0.69 -2.0
278,379 - Psest_0262 0.69 -0.7
278,379 - Psest_0262 0.69 -2.1
278,379 - Psest_0262 0.69 +1.5
278,379 - Psest_0262 0.69 -0.3
278,379 - Psest_0262 0.69 -0.6
278,379 - Psest_0262 0.69 +0.5
278,379 - Psest_0262 0.69 +0.1
278,379 - Psest_0262 0.69 -1.5
278,379 - Psest_0262 0.69 +1.7
278,379 - Psest_0262 0.69 -0.5
278,379 - Psest_0262 0.69 +0.0
278,379 - Psest_0262 0.69 +0.7
278,450 - Psest_0262 0.72 -0.2
278,450 - Psest_0262 0.72 -2.1
278,450 - Psest_0262 0.72 -1.1
278,512 + Psest_0262 0.75 -1.1
278,520 + Psest_0262 0.75 -1.2
278,521 - Psest_0262 0.75 +0.3
278,524 + Psest_0262 0.75 +1.9
278,524 + Psest_0262 0.75 +0.4
278,524 + Psest_0262 0.75 -1.8
278,524 + Psest_0262 0.75 +0.3
278,524 + Psest_0262 0.75 +1.1
278,524 + Psest_0262 0.75 +2.0
278,524 + Psest_0262 0.75 -1.4
278,525 - Psest_0262 0.75 +0.0
278,525 - Psest_0262 0.75 -0.5
278,525 - Psest_0262 0.75 +0.7
278,525 - Psest_0262 0.75 +2.2
278,525 - Psest_0262 0.75 -0.2
278,525 - Psest_0262 0.75 +0.1
278,567 + Psest_0262 0.77 -0.7
278,568 - Psest_0262 0.77 -0.5
278,647 + Psest_0262 0.80 -0.4
278,648 - Psest_0262 0.80 +0.8
278,648 - Psest_0262 0.80 -1.0
278,648 - Psest_0262 0.80 -0.3
278,648 - Psest_0262 0.80 +0.3
278,648 - Psest_0262 0.80 +2.6
278,648 - Psest_0262 0.80 +0.6
278,648 - Psest_0262 0.80 -0.8
278,711 + Psest_0262 0.82 +0.6
278,711 + Psest_0262 0.82 +0.4
278,711 + Psest_0262 0.82 -0.9
278,712 - Psest_0262 0.82 -1.7
278,713 + Psest_0262 0.82 +1.4
278,714 - Psest_0262 0.82 -1.1
278,714 - Psest_0262 0.82 +1.2
278,714 - Psest_0262 0.82 +0.6
278,714 - Psest_0262 0.82 -0.7
278,714 - Psest_0262 0.82 +0.4
278,872 + Psest_0262 0.89 -1.4
278,872 + Psest_0262 0.89 +1.3
278,872 + Psest_0262 0.89 -0.8
278,872 + Psest_0262 0.89 -0.1
278,872 + Psest_0262 0.89 -1.1
278,873 - Psest_0262 0.89 -1.1
278,873 - Psest_0262 0.89 +0.0
278,873 - Psest_0262 0.89 -0.7
278,873 - Psest_0262 0.89 -1.3
278,873 - Psest_0262 0.89 -0.2
278,873 - Psest_0262 0.89 +1.0
278,873 - Psest_0262 0.89 -1.5
278,873 - Psest_0262 0.89 +1.2
279,075 + -0.9
279,248 + +0.8
279,249 - -0.9
279,249 - +0.3
279,314 + -2.6
279,314 + -1.8
279,315 - -1.2
279,315 - -0.0
279,515 + +0.1
279,515 + +2.5
279,515 + -1.2
279,515 + -0.3
279,515 + -0.1
279,516 - -2.7
279,516 - +1.0
279,516 - +0.4
279,622 + Psest_0263 0.14 -0.5
279,622 + Psest_0263 0.14 +0.7
279,622 + Psest_0263 0.14 -2.4
279,623 - Psest_0263 0.14 +0.2
279,812 - Psest_0263 0.24 -3.0
279,958 + Psest_0263 0.32 -2.8
279,958 + Psest_0263 0.32 -0.7
279,958 + Psest_0263 0.32 -1.8
279,958 + Psest_0263 0.32 -1.1
280,074 + Psest_0263 0.38 -1.4
280,075 - Psest_0263 0.38 -0.5
280,075 - Psest_0263 0.38 +0.2
280,075 - Psest_0263 0.38 -0.7
280,086 + Psest_0263 0.38 -1.9
280,179 + Psest_0263 0.43 -0.7
280,180 - Psest_0263 0.43 +0.4
280,188 + Psest_0263 0.43 -2.1
280,188 + Psest_0263 0.43 -1.0
280,188 + Psest_0263 0.43 +0.1
280,188 + Psest_0263 0.43 +1.1
280,188 + Psest_0263 0.43 -0.0
280,188 + Psest_0263 0.43 -1.1
280,189 - Psest_0263 0.43 +0.0
280,189 - Psest_0263 0.43 +0.5
280,282 - Psest_0263 0.48 +0.0
280,660 - Psest_0263 0.68 +0.2
280,660 - Psest_0263 0.68 -0.3
280,728 + Psest_0263 0.71 -1.9
280,729 - Psest_0263 0.71 -1.8
280,866 + Psest_0263 0.79 -0.8
280,867 - Psest_0263 0.79 -0.8
280,867 - Psest_0263 0.79 -3.2
280,946 - Psest_0263 0.83 +3.0
281,118 - -0.3
281,244 + -0.7
281,245 - -1.1
281,268 + +0.1
281,268 + -0.9
281,268 + -1.8
281,268 + -0.7
281,268 + -0.7
281,268 + +1.2
281,268 + -1.6
281,268 + +2.3
281,268 + -0.4
281,268 + +1.1
281,268 + -0.4
281,269 - -0.6
281,269 - +1.3
281,269 - -2.4
281,269 - +0.9
281,269 - +2.1
281,269 - -1.0
281,269 - -1.6
281,269 - -0.1
281,303 - +0.4
281,344 - -0.1
281,390 + +0.0
281,390 + +0.2
281,390 + -1.3
281,390 + -3.4
281,390 + -0.8
281,390 + -0.8
281,390 + -1.5
281,391 - +1.2
281,391 - +2.6
281,391 - -1.4
281,391 - +1.3
281,400 + +0.8
281,400 + +0.6
281,400 + -0.7
281,400 + +1.3
281,401 - -2.9
281,451 + +1.3
281,452 - +1.6
281,511 + Psest_0264 0.15 -0.6
281,511 + Psest_0264 0.15 -0.1
281,511 + Psest_0264 0.15 +0.2
281,511 + Psest_0264 0.15 -1.5
281,511 + Psest_0264 0.15 +1.6
281,511 + Psest_0264 0.15 -0.8
281,511 + Psest_0264 0.15 -1.0
281,511 + Psest_0264 0.15 +1.4
281,512 - Psest_0264 0.16 -1.8
281,512 - Psest_0264 0.16 +1.3
281,512 - Psest_0264 0.16 +0.8
281,512 - Psest_0264 0.16 +1.4
281,512 - Psest_0264 0.16 +0.5
281,512 - Psest_0264 0.16 +1.3
281,512 - Psest_0264 0.16 +0.1
281,512 - Psest_0264 0.16 +1.8
281,512 - Psest_0264 0.16 +2.2
281,512 - Psest_0264 0.16 -0.1
281,512 - Psest_0264 0.16 -0.6
281,512 - Psest_0264 0.16 -1.4
281,512 - Psest_0264 0.16 -1.0
281,512 - Psest_0264 0.16 -1.5
281,512 - Psest_0264 0.16 +1.4
281,512 - Psest_0264 0.16 +1.0
281,512 - Psest_0264 0.16 -0.4
281,512 - Psest_0264 0.16 +0.1
281,512 - Psest_0264 0.16 +0.1
281,512 - Psest_0264 0.16 +0.4
281,512 - Psest_0264 0.16 +0.8
281,512 - Psest_0264 0.16 +0.5
281,512 - Psest_0264 0.16 -1.1
281,512 - Psest_0264 0.16 -0.1
281,512 - Psest_0264 0.16 +0.9
281,512 - Psest_0264 0.16 +0.5
281,512 - Psest_0264 0.16 +0.7
281,556 - Psest_0264 0.22 +0.5
281,673 + Psest_0264 0.38 -1.9
281,673 + Psest_0264 0.38 +0.0
281,673 + Psest_0264 0.38 -0.8
281,673 + Psest_0264 0.38 -0.8
281,674 - Psest_0264 0.38 +1.0
281,674 - Psest_0264 0.38 -0.2
281,674 - Psest_0264 0.38 -1.8
281,674 - Psest_0264 0.38 +0.1
281,674 - Psest_0264 0.38 -1.6
281,674 - Psest_0264 0.38 +1.7
281,674 - Psest_0264 0.38 -0.3
281,674 - Psest_0264 0.38 +0.3
281,974 + Psest_0264 0.79 -1.0
282,056 + -0.3
282,056 + -0.7
282,057 - -0.2
282,057 - -1.4
282,160 + +0.4
282,160 + +1.7
282,160 + -0.2
282,161 - -0.2
282,161 - +0.4
282,161 - +1.3
282,161 - +1.6
282,161 - +0.0
282,162 + -0.6
282,163 - +0.2
282,208 + +1.2

Or see this region's nucleotide sequence