Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2119 and Psest_2120 are separated by 121 nucleotides Psest_2120 and Psest_2121 are separated by 51 nucleotides
Psest_2119: Psest_2119 - Glycine/D-amino acid oxidases (deaminating), at 2,250,175 to 2,251,419
_2119
Psest_2120: Psest_2120 - Transcriptional regulator, at 2,251,541 to 2,252,449
_2120
Psest_2121: Psest_2121 - Predicted ATPase, at 2,252,501 to 2,253,610
_2121
Position (kb)
2251
2252
2253 Strain fitness (log2 ratio)
-1
0
1
2 at 2250.612 kb on - strand, within Psest_2119 at 2250.854 kb on + strand, within Psest_2119 at 2250.854 kb on + strand, within Psest_2119 at 2250.854 kb on + strand, within Psest_2119 at 2250.854 kb on + strand, within Psest_2119 at 2250.854 kb on + strand, within Psest_2119 at 2250.992 kb on + strand, within Psest_2119 at 2250.992 kb on + strand, within Psest_2119 at 2250.993 kb on - strand, within Psest_2119 at 2251.268 kb on + strand, within Psest_2119 at 2251.371 kb on - strand at 2251.452 kb on + strand at 2251.452 kb on + strand at 2251.453 kb on - strand at 2251.555 kb on + strand at 2251.618 kb on + strand at 2251.618 kb on + strand at 2251.618 kb on + strand at 2251.618 kb on + strand at 2251.619 kb on - strand at 2251.619 kb on - strand at 2251.619 kb on - strand at 2251.897 kb on + strand, within Psest_2120 at 2251.898 kb on - strand, within Psest_2120 at 2251.898 kb on - strand, within Psest_2120 at 2252.201 kb on - strand, within Psest_2120 at 2252.216 kb on + strand, within Psest_2120 at 2252.217 kb on - strand, within Psest_2120 at 2252.648 kb on + strand at 2252.648 kb on + strand, within Psest_2121 at 2252.649 kb on - strand, within Psest_2121 at 2252.649 kb on - strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,250,612 - Psest_2119 0.35 +0.5 2,250,854 + Psest_2119 0.55 +0.6 2,250,854 + Psest_2119 0.55 +0.4 2,250,854 + Psest_2119 0.55 +2.5 2,250,854 + Psest_2119 0.55 +1.1 2,250,854 + Psest_2119 0.55 +0.2 2,250,992 + Psest_2119 0.66 +1.1 2,250,992 + Psest_2119 0.66 -0.4 2,250,993 - Psest_2119 0.66 +0.3 2,251,268 + Psest_2119 0.88 -0.5 2,251,371 - -0.0 2,251,452 + +0.3 2,251,452 + +0.8 2,251,453 - -1.3 2,251,555 + +0.7 2,251,618 + -0.3 2,251,618 + -0.0 2,251,618 + -0.8 2,251,618 + -0.9 2,251,619 - -1.0 2,251,619 - -0.3 2,251,619 - -1.2 2,251,897 + Psest_2120 0.39 +0.0 2,251,898 - Psest_2120 0.39 -1.1 2,251,898 - Psest_2120 0.39 -1.0 2,252,201 - Psest_2120 0.73 -1.5 2,252,216 + Psest_2120 0.74 -1.4 2,252,217 - Psest_2120 0.74 -1.4 2,252,648 + +0.5 2,252,648 + Psest_2121 0.13 +1.8 2,252,649 - Psest_2121 0.13 -1.2 2,252,649 - Psest_2121 0.13 +2.0 2,252,820 + Psest_2121 0.29 +1.4 2,252,820 + Psest_2121 0.29 +0.3 2,252,820 + Psest_2121 0.29 -0.2 2,252,820 + Psest_2121 0.29 -0.9 2,252,820 + Psest_2121 0.29 -1.2 2,252,820 + Psest_2121 0.29 -0.3
Or see this region's nucleotide sequence