Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_19

Experiment: Post-colonization (Day 12) - Cage3;Mouse3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 12) - Cage3;Mouse3
16,610	+				-0.5
16,630	-				+0.9
16,630	-				-0.9
16,640	-				-1.7
16,657	+				-7.2
16,666	+				-1.9
16,667	-				-0.6
16,686	-				-0.2
16,686	-				-2.5
16,686	-				-1.0
16,689	+				-3.0
16,689	+				-1.3
16,703	+		p5482_17	0.12	-1.1
16,703	+		p5482_17	0.12	-1.3
16,816	+		p5482_17	0.66	-2.4
16,816	+		p5482_17	0.66	-2.2
16,816	+		p5482_17	0.66	-3.7
16,816	+		p5482_17	0.66	-1.2
16,816	+		p5482_17	0.66	+0.7
16,816	+		p5482_17	0.66	-0.6
16,816	+		p5482_17	0.66	-0.9
16,817	-		p5482_17	0.66	-0.4
16,869	+				-3.1
16,870	-				+0.4
16,886	-				-1.9
16,890	+				-0.6
16,898	-				-0.3
16,909	-				-0.5
16,999	+		p5482_18	0.14	-0.2
16,999	+		p5482_18	0.14	-0.6
17,000	-		p5482_18	0.14	-1.5
17,001	+		p5482_18	0.15	-2.3
17,019	+		p5482_18	0.17	-0.4
17,047	+		p5482_18	0.21	-1.2
17,047	+		p5482_18	0.21	-2.0
17,048	-		p5482_18	0.21	-1.2
17,085	+		p5482_18	0.26	-0.4
17,085	+		p5482_18	0.26	-1.2
17,086	-		p5482_18	0.27	-0.4
17,086	-		p5482_18	0.27	+0.2
17,145	-		p5482_18	0.35	-0.9
17,231	+		p5482_18	0.47	-0.1
17,231	+		p5482_18	0.47	-1.5
17,231	+		p5482_18	0.47	-0.7
17,231	+		p5482_18	0.47	-1.9
17,231	+		p5482_18	0.47	-1.3
17,232	-		p5482_18	0.47	-0.5
17,232	-		p5482_18	0.47	-0.0
17,232	-		p5482_18	0.47	-0.8
17,232	-				+0.7
17,232	-		p5482_18	0.47	-1.1
17,232	-		p5482_18	0.47	-0.5
17,232	-		p5482_18	0.47	-1.2
17,232	-		p5482_18	0.47	-1.3
17,232	-		p5482_18	0.47	-1.2
17,308	-		p5482_18	0.58	-1.6
17,308	-		p5482_18	0.58	-0.9
17,308	-		p5482_18	0.58	-0.8
17,313	+		p5482_18	0.59	-0.3
17,313	+		p5482_18	0.59	-0.7
17,313	+		p5482_18	0.59	-1.0
17,314	-		p5482_18	0.59	-1.8
17,314	-		p5482_18	0.59	-2.2
17,314	-		p5482_18	0.59	-0.4
17,339	-		p5482_18	0.62	+0.1
17,339	-		p5482_18	0.62	-0.4
17,339	-		p5482_18	0.62	-1.1
17,339	-		p5482_18	0.62	+1.7
17,367	-		p5482_18	0.66	-1.2
17,438	+		p5482_18	0.76	-1.1
17,440	+		p5482_18	0.77	-1.9
17,441	-		p5482_18	0.77	-0.2
17,441	-		p5482_18	0.77	-0.4
17,441	-		p5482_18	0.77	+0.2
17,441	-		p5482_18	0.77	-0.3
17,583	+				-2.3
17,583	+				-0.3
17,583	+				-0.3
17,584	-				-3.3
17,584	-				-1.0
17,584	-				-0.3
17,584	-				-2.8
17,584	-				-0.6
17,584	-				-1.7
17,590	-				+1.1
17,590	-				-1.9
17,596	-				-0.7
17,610	-				-0.7
17,629	+				-1.7
17,629	+				-0.6
17,670	+		p5482_19	0.12	-1.0
17,670	+		p5482_19	0.12	-1.4
17,671	-		p5482_19	0.12	-1.1
17,671	-		p5482_19	0.12	+0.8
17,671	-		p5482_19	0.12	+0.4
17,671	-		p5482_19	0.12	-0.5
17,671	-		p5482_19	0.12	-2.0
17,685	+		p5482_19	0.15	-0.8
17,685	+		p5482_19	0.15	-0.7
17,686	-		p5482_19	0.15	-0.2
17,687	+		p5482_19	0.15	-1.3
17,687	+		p5482_19	0.15	+0.2
17,688	-		p5482_19	0.15	-0.9
17,706	+		p5482_19	0.19	-1.9
17,707	-		p5482_19	0.19	-0.8
17,709	-		p5482_19	0.20	-1.6
17,709	-		p5482_19	0.20	-1.3
17,757	+		p5482_19	0.29	-1.4
17,757	+		p5482_19	0.29	-1.2
17,757	+		p5482_19	0.29	-0.3
17,757	+		p5482_19	0.29	-1.5
17,758	-		p5482_19	0.29	-0.2
17,786	+		p5482_19	0.35	-1.4
17,787	-		p5482_19	0.35	-2.7
17,787	-		p5482_19	0.35	+0.7
17,787	-		p5482_19	0.35	-0.9
17,787	-		p5482_19	0.35	-0.2
17,787	-		p5482_19	0.35	-1.3
17,853	+		p5482_19	0.48	+0.2
17,854	-		p5482_19	0.48	+0.5
17,856	+		p5482_19	0.49	+1.4
17,856	+		p5482_19	0.49	-1.2
17,856	+		p5482_19	0.49	-0.5
17,857	-		p5482_19	0.49	-0.1
17,946	+		p5482_19	0.66	-1.9
17,947	-		p5482_19	0.66	-0.3
17,947	-		p5482_19	0.66	-0.6
17,947	-				+0.2
17,979	+		p5482_19	0.73	-3.7
17,979	+		p5482_19	0.73	+0.7
17,980	-		p5482_19	0.73	-1.4
18,011	-		p5482_19	0.79	-2.3
18,059	+		p5482_19	0.89	-0.6
18,059	+		p5482_19	0.89	-1.8
18,060	-		p5482_19	0.89	-0.5
18,077	+				-1.2
18,077	+				+0.2
18,081	+				+1.1
18,109	-				+0.1
18,112	+				-0.9
18,113	-				-1.4
18,113	-				-2.3
18,115	-				-1.1
18,121	-				-0.1
18,124	+				+1.4
18,134	+				+0.4
18,135	-				-0.4
18,144	+				+0.2
18,145	-				-1.5
18,145	-				-1.2
18,150	+				-1.8
18,151	-				-0.6
18,151	-				-0.7
18,237	+		p5482_20	0.22	-0.1
18,237	+		p5482_20	0.22	+1.1
18,237	+		p5482_20	0.22	+0.5
18,237	+		p5482_20	0.22	-1.3
18,237	+		p5482_20	0.22	-0.3
18,237	+		p5482_20	0.22	+0.4
18,238	-		p5482_20	0.23	+3.0
18,238	-		p5482_20	0.23	-0.3
18,238	-		p5482_20	0.23	+0.1
18,238	-		p5482_20	0.23	-0.2
18,245	-		p5482_20	0.24	-0.2
18,281	+		p5482_20	0.32	-0.3
18,281	+		p5482_20	0.32	-0.8
18,281	+		p5482_20	0.32	-1.3
18,281	+		p5482_20	0.32	-0.8
18,282	-		p5482_20	0.32	-0.6
18,295	+		p5482_20	0.35	+0.1
18,308	+		p5482_20	0.38	-0.7
18,362	-		p5482_20	0.50	-0.9
18,362	-		p5482_20	0.50	-0.5
18,397	+		p5482_20	0.57	+1.1
18,556	+				+0.4
18,556	+				-0.4
18,556	+				-1.3
18,556	+				+0.3
18,557	-				-0.5
18,557	-				-0.2
18,557	-				-0.9
18,560	+				-1.0
18,560	+				-0.7
18,560	+				-0.6
18,572	+				-1.0
18,579	+				-2.2
18,582	+				-2.5
18,583	-				-0.3
18,583	-				-1.1
18,583	-				+0.9
18,584	+				+0.5
18,585	-				-2.1
18,585	-				-0.0
18,672	-				-1.1
18,672	-				+0.3
18,706	+				+0.2
18,707	-				-0.6
18,707	-				+0.7
18,841	-				-1.9
18,847	+				-0.1
18,847	+				-0.3
18,875	+				-0.4
18,875	+				+0.5
18,875	+				-0.1
18,876	-				-0.6
18,876	-				+0.4
18,876	-				+0.3
18,879	+				-0.7
18,879	+				+1.1
18,879	+				-0.7
18,880	-				-1.1
18,928	+				-2.3
18,929	-				-1.7
18,941	+				-1.1
18,942	-				-1.5
18,968	+				+1.1
18,969	-				-0.3
18,977	-				-1.5
18,977	-				-0.9
18,977	-				+0.7
18,990	+				+0.8
18,990	+				-0.7
18,991	-				-0.4
18,995	-				-0.6
18,995	-				-0.5
18,995	-				+0.1
18,995	-				+0.4
19,043	+				+0.9
19,044	-				+0.7
19,086	+				+0.2
19,087	-				-0.1
19,087	-				-0.8
19,087	-				-0.3
19,087	-				-0.6
19,091	+				-0.7
19,095	+				-1.1
19,104	-				+0.1