Experiment: Post-colonization (Day 12) - Cage3;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt p5482_12 and p5482_13 are separated by 4 nucleotides p5482_13 and p5482_14 are separated by 11 nucleotides p5482_14 and p5482_15 are separated by 4 nucleotides p5482_15 and p5482_16 overlap by 4 nucleotides
p5482_12: p5482_12 - TraI-like protein (NCBI), at 12,149 to 12,718
_12
p5482_13: p5482_13 - hypothetical protein (NCBI), at 12,723 to 13,496
_13
p5482_14: p5482_14 - hypothetical protein (NCBI), at 13,508 to 14,152
_14
p5482_15: p5482_15 - TraM-like protein (NCBI), at 14,157 to 15,047
_15
p5482_16: p5482_16 - TraN-like protein (NCBI), at 15,044 to 16,141
_16
Position (kb) 13
14
15 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 12.593 kb on - strand, within p5482_12 at 12.658 kb on + strand, within p5482_12 at 12.658 kb on + strand, within p5482_12 at 12.659 kb on - strand, within p5482_12 at 12.659 kb on - strand, within p5482_12 at 12.661 kb on + strand, within p5482_12 at 12.661 kb on + strand, within p5482_12 at 12.678 kb on + strand at 12.679 kb on - strand at 12.722 kb on + strand at 12.723 kb on - strand at 12.723 kb on - strand at 12.747 kb on - strand at 12.753 kb on + strand at 12.754 kb on - strand at 12.819 kb on - strand, within p5482_13 at 12.819 kb on - strand, within p5482_13 at 12.912 kb on + strand, within p5482_13 at 12.912 kb on + strand, within p5482_13 at 12.912 kb on + strand, within p5482_13 at 12.912 kb on + strand, within p5482_13 at 12.912 kb on + strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.913 kb on - strand, within p5482_13 at 12.918 kb on + strand, within p5482_13 at 12.918 kb on + strand, within p5482_13 at 12.919 kb on - strand, within p5482_13 at 12.919 kb on - strand, within p5482_13 at 12.919 kb on - strand, within p5482_13 at 12.919 kb on - strand, within p5482_13 at 12.919 kb on - strand, within p5482_13 at 12.920 kb on + strand, within p5482_13 at 12.920 kb on + strand, within p5482_13 at 12.920 kb on + strand, within p5482_13 at 12.925 kb on - strand, within p5482_13 at 12.925 kb on - strand, within p5482_13 at 12.925 kb on - strand, within p5482_13 at 12.925 kb on - strand, within p5482_13 at 12.925 kb on - strand, within p5482_13 at 12.939 kb on - strand, within p5482_13 at 12.939 kb on - strand, within p5482_13 at 12.939 kb on - strand, within p5482_13 at 12.939 kb on - strand, within p5482_13 at 12.963 kb on - strand, within p5482_13 at 12.963 kb on - strand, within p5482_13 at 13.006 kb on + strand, within p5482_13 at 13.007 kb on - strand, within p5482_13 at 13.007 kb on - strand, within p5482_13 at 13.034 kb on - strand, within p5482_13 at 13.034 kb on - strand, within p5482_13 at 13.034 kb on - strand, within p5482_13 at 13.055 kb on - strand, within p5482_13 at 13.055 kb on - strand, within p5482_13 at 13.062 kb on - strand, within p5482_13 at 13.097 kb on + strand, within p5482_13 at 13.098 kb on - strand, within p5482_13 at 13.157 kb on + strand, within p5482_13 at 13.158 kb on - strand, within p5482_13 at 13.158 kb on - strand, within p5482_13 at 13.163 kb on - strand, within p5482_13 at 13.182 kb on + strand, within p5482_13 at 13.218 kb on + strand, within p5482_13 at 13.219 kb on - strand, within p5482_13 at 13.224 kb on - strand, within p5482_13 at 13.224 kb on - strand, within p5482_13 at 13.224 kb on - strand, within p5482_13 at 13.226 kb on - strand, within p5482_13 at 13.226 kb on - strand, within p5482_13 at 13.256 kb on - strand, within p5482_13 at 13.256 kb on - strand, within p5482_13 at 13.256 kb on - strand, within p5482_13 at 13.324 kb on - strand, within p5482_13 at 13.324 kb on - strand, within p5482_13 at 13.349 kb on - strand, within p5482_13 at 13.368 kb on - strand, within p5482_13 at 13.368 kb on - strand, within p5482_13 at 13.368 kb on - strand, within p5482_13 at 13.368 kb on - strand, within p5482_13 at 13.383 kb on - strand, within p5482_13 at 13.383 kb on - strand, within p5482_13 at 13.383 kb on - strand, within p5482_13 at 13.383 kb on - strand, within p5482_13 at 13.383 kb on - strand, within p5482_13 at 13.411 kb on - strand, within p5482_13 at 13.411 kb on - strand, within p5482_13 at 13.411 kb on - strand, within p5482_13 at 13.411 kb on - strand, within p5482_13 at 13.411 kb on - strand, within p5482_13 at 13.413 kb on - strand, within p5482_13 at 13.413 kb on - strand, within p5482_13 at 13.413 kb on - strand, within p5482_13 at 13.507 kb on + strand at 13.507 kb on + strand at 13.508 kb on - strand at 13.508 kb on - strand at 13.508 kb on - strand at 13.514 kb on - strand at 13.514 kb on - strand at 13.522 kb on + strand at 13.523 kb on - strand at 13.523 kb on - strand at 13.523 kb on - strand at 13.523 kb on - strand at 13.524 kb on + strand at 13.525 kb on - strand at 13.529 kb on - strand at 13.541 kb on - strand at 13.541 kb on - strand at 13.775 kb on - strand, within p5482_14 at 13.866 kb on - strand, within p5482_14 at 13.868 kb on + strand, within p5482_14 at 13.869 kb on - strand, within p5482_14 at 13.870 kb on + strand, within p5482_14 at 13.871 kb on - strand, within p5482_14 at 13.871 kb on - strand, within p5482_14 at 13.916 kb on - strand, within p5482_14 at 13.916 kb on - strand, within p5482_14 at 13.916 kb on - strand, within p5482_14 at 13.927 kb on - strand, within p5482_14 at 13.927 kb on - strand, within p5482_14 at 13.964 kb on + strand, within p5482_14 at 13.965 kb on - strand, within p5482_14 at 13.965 kb on - strand, within p5482_14 at 14.108 kb on - strand at 14.110 kb on - strand at 14.110 kb on - strand at 14.110 kb on - strand at 14.128 kb on - strand at 14.151 kb on - strand at 14.157 kb on - strand at 14.161 kb on - strand at 14.295 kb on - strand, within p5482_15 at 14.295 kb on - strand, within p5482_15 at 14.331 kb on - strand, within p5482_15 at 14.382 kb on + strand, within p5482_15 at 14.403 kb on - strand, within p5482_15 at 14.406 kb on + strand, within p5482_15 at 14.407 kb on - strand, within p5482_15 at 14.429 kb on - strand, within p5482_15 at 14.446 kb on + strand, within p5482_15 at 14.447 kb on - strand, within p5482_15 at 14.447 kb on - strand, within p5482_15 at 14.560 kb on + strand, within p5482_15 at 14.561 kb on - strand, within p5482_15 at 14.657 kb on - strand, within p5482_15 at 14.705 kb on + strand, within p5482_15 at 14.706 kb on - strand, within p5482_15 at 14.760 kb on - strand, within p5482_15 at 14.760 kb on - strand, within p5482_15 at 14.760 kb on - strand, within p5482_15 at 14.760 kb on - strand, within p5482_15 at 14.760 kb on - strand, within p5482_15 at 14.761 kb on + strand, within p5482_15 at 14.796 kb on + strand, within p5482_15 at 14.797 kb on - strand, within p5482_15 at 14.841 kb on - strand, within p5482_15 at 14.841 kb on - strand, within p5482_15 at 14.841 kb on - strand, within p5482_15 at 14.841 kb on - strand, within p5482_15 at 14.843 kb on - strand, within p5482_15 at 14.843 kb on - strand, within p5482_15 at 14.843 kb on - strand, within p5482_15 at 14.844 kb on + strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.845 kb on - strand, within p5482_15 at 14.916 kb on - strand, within p5482_15 at 14.923 kb on - strand, within p5482_15 at 14.939 kb on - strand, within p5482_15 at 14.943 kb on - strand, within p5482_15 at 14.952 kb on - strand, within p5482_15 at 14.952 kb on - strand, within p5482_15 at 15.028 kb on - strand at 15.029 kb on + strand at 15.030 kb on - strand at 15.034 kb on + strand at 15.034 kb on + strand at 15.052 kb on + strand at 15.052 kb on + strand at 15.052 kb on + strand at 15.052 kb on + strand at 15.053 kb on - strand at 15.059 kb on - strand at 15.124 kb on + strand at 15.150 kb on + strand at 15.150 kb on + strand at 15.150 kb on + strand at 15.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage3;Mouse3 remove 12,593 - p5482_12 0.78 -2.2 12,658 + p5482_12 0.89 -1.8 12,658 + p5482_12 0.89 -2.3 12,659 - p5482_12 0.89 -1.2 12,659 - p5482_12 0.89 -1.0 12,661 + p5482_12 0.90 -3.1 12,661 + p5482_12 0.90 -3.3 12,678 + -1.9 12,679 - +0.3 12,722 + -2.9 12,723 - -0.3 12,723 - -1.4 12,747 - -5.0 12,753 + -4.2 12,754 - -0.1 12,819 - p5482_13 0.12 -3.4 12,819 - p5482_13 0.12 -0.6 12,912 + p5482_13 0.24 -2.6 12,912 + p5482_13 0.24 -2.2 12,912 + p5482_13 0.24 +0.2 12,912 + p5482_13 0.24 -0.8 12,912 + p5482_13 0.24 -0.8 12,913 - p5482_13 0.25 +0.5 12,913 - p5482_13 0.25 -0.7 12,913 - p5482_13 0.25 -0.8 12,913 - p5482_13 0.25 -0.3 12,913 - p5482_13 0.25 +0.4 12,913 - p5482_13 0.25 -1.1 12,913 - p5482_13 0.25 -1.2 12,918 + p5482_13 0.25 -1.7 12,918 + p5482_13 0.25 -2.2 12,919 - p5482_13 0.25 -0.8 12,919 - p5482_13 0.25 -1.3 12,919 - p5482_13 0.25 -0.9 12,919 - p5482_13 0.25 -0.5 12,919 - p5482_13 0.25 -1.3 12,920 + p5482_13 0.25 -0.8 12,920 + p5482_13 0.25 +0.7 12,920 + p5482_13 0.25 -2.0 12,925 - p5482_13 0.26 -1.3 12,925 - p5482_13 0.26 -0.4 12,925 - p5482_13 0.26 -0.6 12,925 - p5482_13 0.26 -0.7 12,925 - p5482_13 0.26 -0.6 12,939 - p5482_13 0.28 -0.3 12,939 - p5482_13 0.28 -1.1 12,939 - p5482_13 0.28 -0.4 12,939 - p5482_13 0.28 -0.8 12,963 - p5482_13 0.31 -1.1 12,963 - p5482_13 0.31 +0.6 13,006 + p5482_13 0.37 -0.9 13,007 - p5482_13 0.37 -1.1 13,007 - p5482_13 0.37 -1.6 13,034 - p5482_13 0.40 +0.7 13,034 - p5482_13 0.40 +0.1 13,034 - p5482_13 0.40 -0.4 13,055 - p5482_13 0.43 -1.9 13,055 - p5482_13 0.43 -1.4 13,062 - p5482_13 0.44 -0.6 13,097 + p5482_13 0.48 -0.9 13,098 - p5482_13 0.48 -1.3 13,157 + p5482_13 0.56 -2.3 13,158 - p5482_13 0.56 -0.8 13,158 - p5482_13 0.56 +0.5 13,163 - p5482_13 0.57 -1.2 13,182 + p5482_13 0.59 -2.2 13,218 + p5482_13 0.64 -2.3 13,219 - p5482_13 0.64 -0.7 13,224 - p5482_13 0.65 -0.9 13,224 - p5482_13 0.65 +0.4 13,224 - p5482_13 0.65 -0.2 13,226 - p5482_13 0.65 +0.4 13,226 - p5482_13 0.65 -1.1 13,256 - p5482_13 0.69 -0.3 13,256 - p5482_13 0.69 -0.2 13,256 - p5482_13 0.69 -0.9 13,324 - p5482_13 0.78 -0.9 13,324 - p5482_13 0.78 +0.3 13,349 - p5482_13 0.81 -0.3 13,368 - p5482_13 0.83 +0.2 13,368 - p5482_13 0.83 -0.0 13,368 - p5482_13 0.83 -0.3 13,368 - p5482_13 0.83 -1.2 13,383 - p5482_13 0.85 -3.3 13,383 - p5482_13 0.85 -0.2 13,383 - p5482_13 0.85 +0.3 13,383 - p5482_13 0.85 +0.1 13,383 - p5482_13 0.85 -0.2 13,411 - p5482_13 0.89 +0.0 13,411 - p5482_13 0.89 -1.5 13,411 - p5482_13 0.89 -1.3 13,411 - p5482_13 0.89 -1.3 13,411 - p5482_13 0.89 -0.7 13,413 - p5482_13 0.89 +1.2 13,413 - p5482_13 0.89 -0.8 13,413 - p5482_13 0.89 -1.9 13,507 + -0.9 13,507 + -4.4 13,508 - -1.3 13,508 - -0.1 13,508 - -1.1 13,514 - +0.2 13,514 - -0.0 13,522 + -0.9 13,523 - +0.9 13,523 - -0.5 13,523 - -1.3 13,523 - -0.6 13,524 + -0.5 13,525 - -1.0 13,529 - -0.2 13,541 - -0.0 13,541 - +0.1 13,775 - p5482_14 0.41 +0.7 13,866 - p5482_14 0.56 +0.1 13,868 + p5482_14 0.56 -2.7 13,869 - p5482_14 0.56 -0.2 13,870 + p5482_14 0.56 +1.2 13,871 - p5482_14 0.56 -0.2 13,871 - p5482_14 0.56 -1.7 13,916 - p5482_14 0.63 +0.9 13,916 - p5482_14 0.63 -0.3 13,916 - p5482_14 0.63 -1.2 13,927 - p5482_14 0.65 -0.1 13,927 - p5482_14 0.65 -1.0 13,964 + p5482_14 0.71 -0.3 13,965 - p5482_14 0.71 +2.7 13,965 - p5482_14 0.71 +1.0 14,108 - -1.0 14,110 - -1.0 14,110 - -1.0 14,110 - +1.4 14,128 - -1.3 14,151 - +0.7 14,157 - -0.9 14,161 - -0.3 14,295 - p5482_15 0.15 -1.1 14,295 - p5482_15 0.15 -2.3 14,331 - p5482_15 0.20 -1.3 14,382 + p5482_15 0.25 -3.5 14,403 - p5482_15 0.28 +1.1 14,406 + p5482_15 0.28 -4.0 14,407 - p5482_15 0.28 -0.1 14,429 - p5482_15 0.31 -0.4 14,446 + p5482_15 0.32 -5.3 14,447 - p5482_15 0.33 -0.1 14,447 - p5482_15 0.33 +0.8 14,560 + p5482_15 0.45 -1.9 14,561 - p5482_15 0.45 -0.3 14,657 - p5482_15 0.56 -1.4 14,705 + p5482_15 0.62 +0.7 14,706 - p5482_15 0.62 -0.4 14,760 - p5482_15 0.68 -0.5 14,760 - p5482_15 0.68 -1.0 14,760 - p5482_15 0.68 -0.2 14,760 - p5482_15 0.68 -0.8 14,760 - p5482_15 0.68 -1.3 14,761 + p5482_15 0.68 -0.3 14,796 + p5482_15 0.72 +0.7 14,797 - p5482_15 0.72 +1.7 14,841 - p5482_15 0.77 -0.6 14,841 - p5482_15 0.77 -0.8 14,841 - p5482_15 0.77 -0.6 14,841 - p5482_15 0.77 -1.2 14,843 - p5482_15 0.77 -1.3 14,843 - p5482_15 0.77 -0.3 14,843 - p5482_15 0.77 -0.7 14,844 + p5482_15 0.77 -1.2 14,845 - p5482_15 0.77 -1.0 14,845 - p5482_15 0.77 -1.8 14,845 - p5482_15 0.77 -0.5 14,845 - p5482_15 0.77 -0.7 14,845 - p5482_15 0.77 +0.4 14,845 - p5482_15 0.77 -1.3 14,845 - p5482_15 0.77 -1.3 14,845 - p5482_15 0.77 +0.9 14,916 - p5482_15 0.85 -0.2 14,923 - p5482_15 0.86 -1.0 14,939 - p5482_15 0.88 -0.8 14,943 - p5482_15 0.88 -0.9 14,952 - p5482_15 0.89 -0.3 14,952 - p5482_15 0.89 -2.0 15,028 - +0.0 15,029 + -1.3 15,030 - -1.1 15,034 + -2.2 15,034 + -1.0 15,052 + -1.7 15,052 + -0.4 15,052 + -2.9 15,052 + -1.6 15,053 - -0.8 15,059 - -0.4 15,124 + -1.8 15,150 + -0.1 15,150 + -2.4 15,150 + -1.6 15,151 - -0.8
Or see this region's nucleotide sequence