Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03071 and SMc03072 are separated by 125 nucleotides SMc03072 and SMc03057 overlap by 1 nucleotides SMc03057 and SMc03058 are separated by 34 nucleotides
SMc03071: SMc03071 - hypothetical protein, at 751,953 to 752,507
SMc03071
SMc03072: SMc03072 - hypothetical protein, at 752,633 to 753,001
SMc03072
SMc03057: SMc03057 - hypothetical protein, at 753,001 to 753,567
SMc03057
SMc03058: SMc03058 - glycosyltransferase, at 753,602 to 754,591
SMc03058
Position (kb) 753
754 Strain fitness (log2 ratio) -2
-1
0
1 at 752.368 kb on + strand, within SMc03071 at 752.448 kb on + strand, within SMc03071 at 752.449 kb on - strand, within SMc03071 at 752.544 kb on + strand at 752.545 kb on - strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.553 kb on - strand at 752.619 kb on + strand at 752.619 kb on + strand at 752.632 kb on + strand at 752.777 kb on + strand, within SMc03072 at 752.778 kb on - strand, within SMc03072 at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.968 kb on + strand at 752.968 kb on + strand at 753.058 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.149 kb on + strand, within SMc03057 at 753.187 kb on + strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.229 kb on - strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.278 kb on - strand, within SMc03057 at 753.424 kb on + strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.475 kb on + strand, within SMc03057 at 753.644 kb on + strand at 753.758 kb on + strand, within SMc03058 at 753.758 kb on + strand, within SMc03058 at 753.759 kb on - strand, within SMc03058 at 753.972 kb on - strand, within SMc03058 at 753.983 kb on - strand, within SMc03058 at 754.060 kb on - strand, within SMc03058 at 754.230 kb on - strand, within SMc03058 at 754.242 kb on + strand, within SMc03058 at 754.243 kb on - strand, within SMc03058 at 754.243 kb on - strand, within SMc03058
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 752,368 + SMc03071 0.75 -0.1 752,448 + SMc03071 0.89 -0.0 752,449 - SMc03071 0.89 +0.1 752,544 + -1.2 752,545 - +0.0 752,552 + -1.2 752,552 + -0.4 752,552 + +0.3 752,553 - +0.1 752,619 + +1.2 752,619 + -0.5 752,632 + +0.3 752,777 + SMc03072 0.39 +0.6 752,778 - SMc03072 0.39 +1.5 752,967 - +1.0 752,967 - +0.3 752,967 - -0.5 752,967 - -2.1 752,968 + +0.7 752,968 + +0.4 753,058 + SMc03057 0.10 -0.3 753,130 + SMc03057 0.23 +0.5 753,130 + SMc03057 0.23 -0.2 753,130 + SMc03057 0.23 +0.8 753,130 + SMc03057 0.23 -2.0 753,130 + SMc03057 0.23 -0.7 753,131 - SMc03057 0.23 -0.8 753,131 - SMc03057 0.23 +0.3 753,131 - SMc03057 0.23 -0.5 753,131 - SMc03057 0.23 -0.0 753,149 + SMc03057 0.26 -1.0 753,187 + SMc03057 0.33 -0.8 753,188 - SMc03057 0.33 -0.8 753,188 - SMc03057 0.33 -1.8 753,229 - SMc03057 0.40 -1.6 753,277 + SMc03057 0.49 +0.2 753,277 + SMc03057 0.49 -0.1 753,278 - SMc03057 0.49 +1.1 753,424 + SMc03057 0.75 -0.5 753,425 - SMc03057 0.75 +0.7 753,425 - SMc03057 0.75 -0.5 753,475 + SMc03057 0.84 -0.1 753,644 + -0.6 753,758 + SMc03058 0.16 -1.2 753,758 + SMc03058 0.16 -0.5 753,759 - SMc03058 0.16 +0.0 753,972 - SMc03058 0.37 +0.9 753,983 - SMc03058 0.38 -0.8 754,060 - SMc03058 0.46 -0.2 754,230 - SMc03058 0.63 +0.0 754,242 + SMc03058 0.65 +1.1 754,243 - SMc03058 0.65 -0.5 754,243 - SMc03058 0.65 +0.8
Or see this region's nucleotide sequence