Strain Fitness in Sinorhizobium meliloti 1021 around SMc02559

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,203,068	+		SMc02565	0.58	+0.1
1,203,074	+		SMc02565	0.59	+1.7
1,203,219	-		SMc02565	0.73	+0.5
1,203,219	-		SMc02565	0.73	-0.1
1,203,231	+		SMc02565	0.75	-1.1
1,203,231	+		SMc02565	0.75	+0.1
1,203,233	+		SMc02565	0.75	+0.5
1,203,234	-		SMc02565	0.75	+0.1
1,203,234	-		SMc02565	0.75	+0.4
1,203,234	-		SMc02565	0.75	+0.3
1,203,713	+		SMc02561	0.51	-0.3
1,203,713	+		SMc02561	0.51	-0.3
1,203,713	+				+1.7
1,204,163	+		SMc02559	0.31	+0.4
1,204,164	-		SMc02559	0.31	+2.1
1,204,277	+		SMc02559	0.49	+0.1
1,204,278	-		SMc02559	0.50	+0.1
1,204,328	+		SMc02559	0.58	-0.4
1,204,329	-		SMc02559	0.58	-0.1
1,204,329	-		SMc02559	0.58	+0.5
1,204,329	-		SMc02559	0.58	-0.9
1,204,329	-		SMc02559	0.58	+0.1
1,204,329	-		SMc02559	0.58	-0.1
1,204,557	+				+0.2
1,204,557	+				+2.1
1,204,557	+				-0.3
1,204,558	-				+0.3
1,204,558	-				+0.1
1,204,741	-		SMc02558	0.19	-1.5
1,204,885	+		SMc02558	0.36	-0.4
1,204,886	-		SMc02558	0.36	-2.4
1,204,961	-		SMc02558	0.45	+0.1
1,205,095	+		SMc02558	0.61	-2.1
1,205,096	-		SMc02558	0.61	+0.3
1,205,096	-		SMc02558	0.61	-1.4
1,205,182	+		SMc02558	0.71	-1.7
1,205,429	+				+0.6
1,205,429	+				-0.1
1,205,429	+				+0.7
1,205,430	-				-0.1
1,205,430	-				+0.8
1,205,442	-				-0.5
1,205,442	-				-0.2
1,205,462	-				-0.5
1,205,462	-				+1.0