Strain Fitness in Sinorhizobium meliloti 1021 around SMc02360

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,780,138	+				-0.9
2,780,139	-				+0.0
2,780,139	-				-0.6
2,780,208	-				-0.5
2,780,208	-				+0.1
2,780,240	+				+0.3
2,780,240	+				+0.5
2,780,241	-				-0.6
2,780,241	-				-0.8
2,780,270	+		SMc02359	0.13	-0.3
2,780,298	-		SMc02359	0.16	-0.6
2,780,393	+		SMc02359	0.27	-0.6
2,780,394	-		SMc02359	0.27	+0.1
2,780,394	-		SMc02359	0.27	-0.2
2,780,924	+		SMc02359	0.86	+0.9
2,780,924	+		SMc02359	0.86	+0.3
2,780,925	-		SMc02359	0.86	+0.6
2,780,925	-		SMc02359	0.86	-0.2
2,781,071	+				+0.3
2,781,071	+				+0.6
2,781,072	-				-0.0
2,781,106	+				-1.9
2,781,107	-				+0.0
2,781,146	+				-1.3
2,781,154	+				-1.4
2,781,154	+				+0.5
2,781,266	+		SMc02360	0.20	-0.2
2,781,267	-		SMc02360	0.20	+0.6
2,781,327	-		SMc02360	0.26	-0.1
2,781,482	+		SMc02360	0.41	-0.6
2,781,482	+		SMc02360	0.41	-0.1
2,781,483	-		SMc02360	0.41	-0.5
2,781,891	-		SMc02360	0.81	-0.2
2,782,038	+				-0.2
2,782,115	-				-0.6
2,782,115	-				+0.2
2,782,118	-				+0.7
2,782,181	+		SMc02412	0.14	+0.3
2,782,181	+		SMc02412	0.14	-0.4
2,782,181	+		SMc02412	0.14	-0.8
2,782,182	-		SMc02412	0.15	+0.5
2,782,182	-		SMc02412	0.15	-0.6
2,782,198	+		SMc02412	0.17	-0.7
2,782,199	-		SMc02412	0.17	-0.8
2,782,215	+		SMc02412	0.20	+0.1
2,782,215	+		SMc02412	0.20	-0.1
2,782,216	-		SMc02412	0.20	+1.2
2,782,249	+		SMc02412	0.25	-0.0
2,782,250	-		SMc02412	0.25	-0.4
2,782,257	+		SMc02412	0.26	+0.9
2,782,257	+		SMc02412	0.26	+0.2
2,782,258	-		SMc02412	0.26	+1.0
2,782,258	-		SMc02412	0.26	-0.2
2,782,258	-		SMc02412	0.26	+0.3
2,782,402	+		SMc02412	0.48	-0.1
2,782,403	-		SMc02412	0.48	+0.3
2,782,536	+		SMc02412	0.68	-0.9
2,782,537	-		SMc02412	0.68	-1.0
2,782,705	+				+0.1
2,782,706	-				+0.3
2,782,706	-				-0.0
2,782,992	-		SMc02413	0.17	-1.5