Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02189 and SMc02200 are separated by 1 nucleotides SMc02200 and SMc02184 are separated by 136 nucleotides
SMc02189: SMc02189 - hypothetical protein, at 545,715 to 545,969
SMc02189
SMc02200: SMc02200 - hypothetical protein, at 545,971 to 546,495
SMc02200
SMc02184: SMc02184 - transcriptional regulator, at 546,632 to 546,901
SMc02184
Position (kb) 545
546 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 544.741 kb on + strand at 544.826 kb on + strand at 544.826 kb on + strand at 544.827 kb on - strand at 544.827 kb on - strand at 544.893 kb on + strand at 544.893 kb on + strand at 544.894 kb on - strand at 544.894 kb on - strand at 544.894 kb on - strand at 544.925 kb on + strand at 544.926 kb on - strand at 544.926 kb on - strand at 544.991 kb on - strand at 544.993 kb on + strand at 544.993 kb on + strand at 544.994 kb on - strand at 544.994 kb on - strand at 545.118 kb on - strand at 545.273 kb on - strand at 545.273 kb on - strand at 545.284 kb on + strand at 545.285 kb on - strand at 545.288 kb on + strand at 545.289 kb on - strand at 545.289 kb on - strand at 545.361 kb on + strand at 545.397 kb on + strand at 545.397 kb on + strand at 545.397 kb on + strand at 545.398 kb on - strand at 545.430 kb on - strand at 545.434 kb on + strand at 545.438 kb on + strand at 545.439 kb on - strand at 545.443 kb on + strand at 545.443 kb on + strand at 545.443 kb on + strand at 545.755 kb on + strand, within SMc02189 at 545.796 kb on - strand, within SMc02189 at 545.915 kb on + strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.919 kb on + strand, within SMc02189 at 545.920 kb on - strand, within SMc02189 at 545.933 kb on + strand, within SMc02189 at 545.934 kb on - strand, within SMc02189 at 545.934 kb on - strand, within SMc02189 at 545.951 kb on - strand at 546.070 kb on + strand, within SMc02200 at 546.070 kb on + strand, within SMc02200 at 546.095 kb on - strand, within SMc02200 at 546.095 kb on - strand, within SMc02200 at 546.135 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.175 kb on - strand, within SMc02200 at 546.201 kb on + strand, within SMc02200 at 546.326 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.400 kb on + strand, within SMc02200 at 546.469 kb on + strand at 546.469 kb on + strand at 546.556 kb on + strand at 546.557 kb on - strand at 546.557 kb on - strand at 546.562 kb on - strand at 546.615 kb on + strand at 546.616 kb on - strand at 546.690 kb on + strand, within SMc02184 at 546.691 kb on - strand, within SMc02184 at 546.735 kb on - strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 544,741 + -0.1 544,826 + -0.0 544,826 + -0.4 544,827 - +0.1 544,827 - -0.2 544,893 + -0.1 544,893 + +0.3 544,894 - -0.4 544,894 - +0.3 544,894 - -1.3 544,925 + +0.2 544,926 - +1.0 544,926 - +0.6 544,991 - -0.5 544,993 + -0.0 544,993 + -1.7 544,994 - +0.4 544,994 - -0.3 545,118 - -1.3 545,273 - -0.0 545,273 - +0.9 545,284 + +0.0 545,285 - +0.2 545,288 + -0.2 545,289 - -0.6 545,289 - +1.1 545,361 + +0.2 545,397 + -0.5 545,397 + +0.4 545,397 + -0.2 545,398 - -1.6 545,430 - +0.8 545,434 + +1.1 545,438 + +0.3 545,439 - +0.4 545,443 + -0.3 545,443 + -0.2 545,443 + -0.1 545,755 + SMc02189 0.16 +3.4 545,796 - SMc02189 0.32 +0.5 545,915 + SMc02189 0.78 +0.2 545,916 - SMc02189 0.79 -0.2 545,916 - SMc02189 0.79 +1.8 545,916 - SMc02189 0.79 -0.2 545,916 - SMc02189 0.79 +0.4 545,916 - SMc02189 0.79 -0.1 545,919 + SMc02189 0.80 +0.7 545,920 - SMc02189 0.80 -0.3 545,933 + SMc02189 0.85 -0.2 545,934 - SMc02189 0.86 -0.6 545,934 - SMc02189 0.86 -0.3 545,951 - +0.5 546,070 + SMc02200 0.19 +0.5 546,070 + SMc02200 0.19 -0.7 546,095 - SMc02200 0.24 +1.4 546,095 - SMc02200 0.24 +0.0 546,135 - SMc02200 0.31 +0.9 546,171 - SMc02200 0.38 +0.1 546,171 - SMc02200 0.38 -0.1 546,171 - SMc02200 0.38 -1.9 546,171 - SMc02200 0.38 +0.3 546,175 - SMc02200 0.39 -0.3 546,201 + SMc02200 0.44 -0.2 546,326 + SMc02200 0.68 +1.3 546,333 + SMc02200 0.69 +1.4 546,333 + SMc02200 0.69 -0.6 546,398 - SMc02200 0.81 +0.4 546,398 - SMc02200 0.81 +0.4 546,400 + SMc02200 0.82 +0.5 546,469 + +0.4 546,469 + +0.2 546,556 + -0.7 546,557 - -0.0 546,557 - -0.3 546,562 - -2.6 546,615 + -1.1 546,616 - +0.3 546,690 + SMc02184 0.21 -0.6 546,691 - SMc02184 0.22 +0.2 546,735 - SMc02184 0.38 -1.4 546,783 + SMc02184 0.56 -0.3 546,783 + SMc02184 0.56 +1.8 546,784 - SMc02184 0.56 -0.6 546,784 - SMc02184 0.56 +0.4 546,784 - SMc02184 0.56 +0.4 546,895 + -0.1 546,895 + -0.0 546,895 + -0.4 546,895 + -0.4 546,895 + -0.7 546,896 - +1.1 546,896 - +0.1 546,896 - +0.3 546,899 + +0.4
Or see this region's nucleotide sequence