Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01175 and SMc01174 are separated by 269 nucleotides SMc01174 and SMc01173 are separated by 7 nucleotides SMc01173 and SMc01172 are separated by 197 nucleotides
SMc01175: SMc01175 - oxidoreductase, at 1,754,542 to 1,755,390
SMc01175
SMc01174: SMc01174 - cysteine synthase A, at 1,755,660 to 1,756,745
SMc01174
SMc01173: SMc01173 - hypothetical protein, at 1,756,753 to 1,757,502
SMc01173
SMc01172: SMc01172 - thiosulfate sulfurtransferase, at 1,757,700 to 1,758,563
SMc01172
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-2
-1
0
1 at 1754.664 kb on + strand, within SMc01175 at 1754.664 kb on + strand, within SMc01175 at 1754.664 kb on + strand, within SMc01175 at 1754.684 kb on + strand, within SMc01175 at 1754.685 kb on - strand, within SMc01175 at 1754.688 kb on + strand, within SMc01175 at 1754.688 kb on + strand, within SMc01175 at 1754.812 kb on - strand, within SMc01175 at 1754.812 kb on - strand, within SMc01175 at 1754.916 kb on - strand, within SMc01175 at 1754.943 kb on - strand, within SMc01175 at 1754.994 kb on + strand, within SMc01175 at 1754.995 kb on - strand, within SMc01175 at 1754.995 kb on - strand, within SMc01175 at 1755.143 kb on + strand, within SMc01175 at 1755.244 kb on + strand, within SMc01175 at 1755.244 kb on + strand, within SMc01175 at 1755.244 kb on + strand, within SMc01175 at 1755.245 kb on - strand, within SMc01175 at 1755.245 kb on - strand, within SMc01175 at 1755.379 kb on + strand at 1755.380 kb on - strand at 1755.380 kb on - strand at 1755.380 kb on - strand at 1755.435 kb on + strand at 1755.436 kb on - strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.451 kb on - strand at 1755.451 kb on - strand at 1755.452 kb on + strand at 1755.452 kb on + strand at 1755.453 kb on - strand at 1755.453 kb on - strand at 1755.554 kb on + strand at 1755.555 kb on - strand at 1755.555 kb on - strand at 1755.567 kb on + strand at 1755.596 kb on + strand at 1755.654 kb on + strand at 1755.655 kb on - strand at 1755.666 kb on - strand at 1755.704 kb on + strand at 1755.705 kb on - strand at 1755.705 kb on - strand at 1755.705 kb on - strand at 1755.915 kb on - strand, within SMc01174 at 1755.967 kb on - strand, within SMc01174 at 1756.066 kb on - strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.353 kb on + strand, within SMc01174 at 1756.353 kb on + strand, within SMc01174 at 1756.354 kb on - strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.495 kb on - strand, within SMc01174 at 1756.524 kb on - strand, within SMc01174 at 1756.524 kb on - strand, within SMc01174 at 1756.623 kb on + strand, within SMc01174 at 1756.623 kb on + strand, within SMc01174 at 1756.624 kb on - strand, within SMc01174 at 1756.636 kb on - strand, within SMc01174 at 1756.717 kb on + strand at 1756.717 kb on + strand at 1756.718 kb on - strand at 1756.718 kb on - strand at 1756.728 kb on + strand at 1756.744 kb on - strand at 1756.744 kb on - strand at 1756.868 kb on - strand, within SMc01173 at 1757.054 kb on - strand, within SMc01173 at 1757.234 kb on - strand, within SMc01173 at 1757.464 kb on - strand at 1757.465 kb on + strand at 1757.596 kb on - strand at 1757.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 1,754,664 + SMc01175 0.14 -0.8 1,754,664 + SMc01175 0.14 +0.2 1,754,664 + SMc01175 0.14 -0.7 1,754,684 + SMc01175 0.17 -0.0 1,754,685 - SMc01175 0.17 +0.1 1,754,688 + SMc01175 0.17 -0.2 1,754,688 + SMc01175 0.17 -0.7 1,754,812 - SMc01175 0.32 -0.1 1,754,812 - SMc01175 0.32 -0.2 1,754,916 - SMc01175 0.44 +0.9 1,754,943 - SMc01175 0.47 +0.6 1,754,994 + SMc01175 0.53 +1.4 1,754,995 - SMc01175 0.53 +0.1 1,754,995 - SMc01175 0.53 -0.4 1,755,143 + SMc01175 0.71 -0.2 1,755,244 + SMc01175 0.83 -1.9 1,755,244 + SMc01175 0.83 -0.6 1,755,244 + SMc01175 0.83 -1.1 1,755,245 - SMc01175 0.83 -0.3 1,755,245 - SMc01175 0.83 -0.4 1,755,379 + +0.6 1,755,380 - +0.1 1,755,380 - -0.2 1,755,380 - +0.4 1,755,435 + +0.3 1,755,436 - -0.4 1,755,450 + -0.2 1,755,450 + -0.3 1,755,450 + -0.5 1,755,450 + -0.2 1,755,450 + -0.8 1,755,450 + +0.2 1,755,451 - -0.9 1,755,451 - -0.6 1,755,452 + +0.2 1,755,452 + -0.2 1,755,453 - +1.5 1,755,453 - -0.5 1,755,554 + -1.3 1,755,555 - +0.0 1,755,555 - -0.6 1,755,567 + +0.8 1,755,596 + +0.1 1,755,654 + -0.7 1,755,655 - -1.1 1,755,666 - -0.8 1,755,704 + -0.8 1,755,705 - -1.6 1,755,705 - -0.3 1,755,705 - -1.3 1,755,915 - SMc01174 0.23 -1.3 1,755,967 - SMc01174 0.28 -0.1 1,756,066 - SMc01174 0.37 -0.1 1,756,083 + SMc01174 0.39 -1.3 1,756,083 + SMc01174 0.39 -0.3 1,756,083 + SMc01174 0.39 +0.2 1,756,084 - SMc01174 0.39 -2.5 1,756,084 - SMc01174 0.39 -1.9 1,756,084 - SMc01174 0.39 -1.3 1,756,084 - SMc01174 0.39 -0.9 1,756,353 + SMc01174 0.64 -2.7 1,756,353 + SMc01174 0.64 -1.0 1,756,354 - SMc01174 0.64 -0.9 1,756,494 + SMc01174 0.77 -1.8 1,756,494 + SMc01174 0.77 -1.9 1,756,494 + SMc01174 0.77 -1.5 1,756,495 - SMc01174 0.77 +0.2 1,756,524 - SMc01174 0.80 -1.2 1,756,524 - SMc01174 0.80 -1.3 1,756,623 + SMc01174 0.89 -0.9 1,756,623 + SMc01174 0.89 -1.6 1,756,624 - SMc01174 0.89 -2.0 1,756,636 - SMc01174 0.90 -0.6 1,756,717 + +1.4 1,756,717 + +1.0 1,756,718 - -1.0 1,756,718 - +0.3 1,756,728 + -1.3 1,756,744 - +0.2 1,756,744 - +0.6 1,756,868 - SMc01173 0.15 +0.0 1,757,054 - SMc01173 0.40 -0.1 1,757,234 - SMc01173 0.64 -0.7 1,757,464 - +1.1 1,757,465 + +1.2 1,757,596 - -0.1 1,757,672 - -0.5
Or see this region's nucleotide sequence